Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01088 ATGGAACGCACCACATCTTTCAACGACACCAATAATAGTCTCTATTCACAACGAAGTCTCGCTTCAGTTCCTTCCCTCAACTCACACCTCTTCAACGCTTCCACCACCTCTCACACCTGCCTCGCCACTCTCAAACCCTATACCTCCTCCTACACCTCCTCCCTCACCCTCGCCGGCAAGTTCCTCTACGCAGGCTCCTCCGACAGAGAAATCAGATCCTGGAATCACACCATTTTCCTCTCGCAACACCAACAAAACACCAACATCGTAACCGCGGGAAAAGGTGCCGTGAAATCCATAGTGGTCCACTCCGACAAGCTCTTCACCGCACACCAAGACCATAAAATCCGCGTCTGGAGAATCACCACCCACGAACACGACCACCAGAAGTTCACACGTGTGGCCACACTCCCCACGCTCGGCGACCGCGTTACGAAAATCTTGATCCCCAAGAATCACGTTCAGATTCGTCGCCACAAGAAGTGCACCTGGGTTCACCACGTGGACACCGTCTCCTCCCTCGCCTTGTCCCACGACGGAACGTTATTGTACTCCGTTTCTTGGGACCGCACGATCAAGGTTTGGCGGACGAAAGACTTCGCGTGCTTGGAGTCCGTTCGCAACGCCCACGACGACGCCATAAACGCTGTGGCAGTTTCTGAGGATGGGCACGTGTACACTGGATCCGCGGACAAGAGAATCAGGGTTTGGAGGAAAAGGGAAGGGGAGAAGAAACACTCGGTGGTGGACACGTTGGAGAAACACAACTCAGGGATTAACGCTTTGGCTCTGAGCAGTGACGGGTGCGTGTTGTATTCTGGTGCATGTGACAGGTCGATACTGGTTTCGGAGAAGGGAGAGAATGGTAAATTGGTGGTGGTTGGTGCTTTGAGGGGGCACACCAAGTCCATTTTGTGCTTGGGTGTGGTTTCGGATTTGGTGTGTAGTGGTTCTGAGGACAAAACGGTGCGTATTTGGAGAGGGATGCAGAAGGAGTATTCGTGCTTGGCTGTTCTGGAAGGGCATAGGAGTCCCATTAAGAGCCTAACTGCAACGCTTGATCCTTCAGATGACCCTTCCCAACTATCTTTTCTTGTCTATAGTGCCAGTTTGGACTCTGATGTCAAAGTTTGGCAGGTTTTTCTTCCTCTTCTTTCAACCTAA 1164 0.5206 MERTTSFNDTNNSLYSQRSLASVPSLNSHLFNASTTSHTCLATLKPYTSSYTSSLTLAGKFLYAGSSDREIRSWNHTIFLSQHQQNTNIVTAGKGAVKSIVVHSDKLFTAHQDHKIRVWRITTHEHDHQKFTRVATLPTLGDRVTKILIPKNHVQIRRHKKCTWVHHVDTVSSLALSHDGTLLYSVSWDRTIKVWRTKDFACLESVRNAHDDAINAVAVSEDGHVYTGSADKRIRVWRKREGEKKHSVVDTLEKHNSGINALALSSDGCVLYSGACDRSILVSEKGENGKLVVVGALRGHTKSILCLGVVSDLVCSGSEDKTVRIWRGMQKEYSCLAVLEGHRSPIKSLTATLDPSDDPSQLSFLVYSASLDSDVKVWQVFLPLLST* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01088 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 247 IPR001680 GO:0005515
Lapu3g01088 387 Gene3D - 153 246 IPR015943 GO:0005515
Lapu3g01088 387 Gene3D - 25 152 IPR015943 GO:0005515
Lapu3g01088 387 CDD WD40 40 379 - -
Lapu3g01088 387 SMART WD40_4 199 238 IPR001680 GO:0005515
Lapu3g01088 387 SMART WD40_4 157 196 IPR001680 GO:0005515
Lapu3g01088 387 SMART WD40_4 245 284 IPR001680 GO:0005515
Lapu3g01088 387 SMART WD40_4 37 75 IPR001680 GO:0005515
Lapu3g01088 387 SMART WD40_4 290 327 IPR001680 GO:0005515
Lapu3g01088 387 SMART WD40_4 83 120 IPR001680 GO:0005515
Lapu3g01088 387 SMART WD40_4 332 379 IPR001680 GO:0005515
Lapu3g01088 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 297 326 - -
Lapu3g01088 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 164 195 - -
Lapu3g01088 387 SUPERFAMILY WD40 repeat-like 38 380 IPR036322 GO:0005515
Lapu3g01088 387 Gene3D - 247 384 IPR015943 GO:0005515
Lapu3g01088 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 326 IPR001680 GO:0005515
Lapu3g01088 387 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 380 IPR045182 -
Lapu3g01088 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 237 - -
Lapu3g01088 387 FunFam BnaA09g28200D protein 154 242 - -
Lapu3g01088 387 Pfam WD domain, G-beta repeat 203 237 IPR001680 GO:0005515
Lapu3g01088 387 Pfam WD domain, G-beta repeat 295 326 IPR001680 GO:0005515
Lapu3g01088 387 Pfam WD domain, G-beta repeat 334 378 IPR001680 GO:0005515
Lapu3g01088 387 Pfam WD domain, G-beta repeat 250 281 IPR001680 GO:0005515
Lapu3g01088 387 Pfam WD domain, G-beta repeat 165 195 IPR001680 GO:0005515
Lapu3g01088 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 164 205 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01088 Lapu-Chr3 11685868 11687031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01088 209 379 Acyl Lipid Metabolism Gene Families AT3G18860 26.816 4.67e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01088 - - gmx:100794737 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01088 3 11685868 11687031 Lapu9g00629 9 7391825 7393250 ECH
Lapu3g01088 3 11685868 11687031 Lapu3g01088 3 11685868 11687031 ECH
Lapu3g01088 3 11685868 11687031 Lapu9g00629 9 7391825 7393250 PCT