Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00488 ATGGCAGTTTCCATGAGAGATCTGGATCCAGCTTTCCAGGGAGCTGGACAAAAGGCTGGACTTGAGATATGGCGTATTGAGAATTTTAATCCAGTTCCAGTTCCAAAATCCTCTTATGGGAAATTTTTCACTGGAGACTCCTATGTGATCTTAAAGACAACTGCATCAAAAAGTGGTGCTCTGCGCCATGACATCCATTACTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGTGCTGCAGCCATCAAAACAGTTGAGCTGGATGCAGCTCTTGGAGGACGTGCTGTTCAGTATCGTGAAGTGCAAGGCCATGAAACTGAAAAGTTCCTATCTTATTTCAAACCATGTATTATCCCTCAAGAAGGTGGAGTTGCTTCTGGTTTCAAACATCCTGAGGCTGAAAAACATAAGGCACGGTTGTTTGTATGCAGAGGAAAACATGTTGTACATGTCAAAGAGGTTCCATTTGCTAGAGCTTCACTGAACCATGATGATATTTTTGTTCTGGATACCGAATCAAAAATTTTCCAATTTAATGGTTCGAATTCATCAATTCAAGAAAGGGCTAAAGCTTTGGAAGTTGTACAGTATATTAAAGATACCTACCATGATGGAAAATGTGATGTAGCTGCTGTTGAGGATGGAAAATTGATGGCTGATCCTGAAACTGGGGAATTCTGGGGTTTCTTTGGGGGATTTGCTCCTCTTCCACGAAAAACAGCCGGTGATGATGATAAGCTTACTGATTCTGGCCCTCCGAAACTGCTCTGTATTGAAAAGGGACAGGCAGAACCTGTGGAGGCTGATTCTTTGAAAAGAGAATTACTAGACACAAATAAATGCTATATTCTTGATTGTGGGTTTGAAGTGTTTGTCTGGATGGGTAGAAATACCTCCCTCGATGAAAGAAAAAGTGCAAGTGGAGTTGCAGATGAGTTAGTCAGCGGCACTGATAAACTGAAACCACAAATAATTCGTGTGATAGAAGGATTTGAGACAGTGATGTTCAGATCCAAATTTGATTCATGGCCTCAGACAACTGATGTAACAGTATCTGAAGATGGTCGTGGCAAGGTAGCTGCTCTCCTAAAACGGCAAGGAGTAAATGTGAAGGGCTTGTTGAAAGCTGATCCAGTGAGGGAAGAGCCTCAACCCCATATTGATTGCACAGGGCATTTGCAGGTTTGGCGCGTGAACGGTCAAGAAAAAATTCTTCTTCAAGCTTCTGATCAGTCAAAGTTTTATAGTGGAAATTGCTACATCTTTCAGTATACATATCCTGGAGAGGATAAAGAAGATTGTCTTATTGGAACATGGATTGGAAAGAATAGTGTTGAGGAAGAACAAGCTTCAGCTAACTCATTGGCAAGCAAAATGGTTGAGTCAATGAAGTTTCTTGCTTGCCAGGCTCGTATATATGAAGGCAACGAACCAGTTCAATTTCATTCTATCCTCCAAAGCTTCATTGTTTTTAAGGGTGGGCTTGGTGAAGGATACAAGACTTACATTGCTGGAAAGGAAATTCCTGATGAGACATACAATGAGAATGGTGTTGCATTATTCCGTATCCAAGGCTCTGGACCAGATAATATGCAAGCTATACAAGTTGAACCAGTTGCATCTTCCTTGAATTCCTGTTACTGTTACATACTTCATAATGGGCCAGCTATCTTTACTTGGTCTGGAAACTCTACAAGTGCAGAAGACCAAGAACTTGTTGAGAGGATGCTGGATTTGATAAAGCCAAACTTACAATCCAAACCACAGAGGGAAGGTTCCGAATCTGAACAGTTTTGGGATTTGTTAGGAGGAAAATCAGAATATCCCAGTCAAAAGATCCTTAGAGAGGCTGAAAGTGATCCTCATCTATTTTCTTGTCACTTCTCAAAAGGAAATTTAAAGGTGACAGAGGTATACAACTTCTCCCAGGATGATTTGATGACAGAAGACATTTTCATCTTGGATTGTCATTTGGAAATCTTTGTCTGGGTTGGACAGCAGGTTGACTCCAAAAGTAGAATGCAGGCTCTAACAATTGGCGAGAAATTTCTTGAGCATGATTTTCTTCTAGAAAAATTATCTCGTGTAGCTCCAATATATGTTGTCATGGAAGGGAGTGAGCCACCTTTTTTCACACGCTTCTTTAAATGGGATTCTGCAAAATCTGCAATGCTGGGAAACTCATTTCAAAGGAAGCTTACGCTTGTGAAAAGTGGGGGTGCTCCACTTTTGGATAAACCCAAACGGAGAACACCAGTATCTTATGGGGGAAGGTCAAGTAGTGTGCCAGATAAATCCCAGCGTTCATCCCGCAGCATGTCTGTCAGTCCTGATCGTGTTCGTGTGCGGGGCAGGTCTCCAGCCTTTAATGCTCTAGCAGCTACTTTCGAGAACCCTAATGCTAGGAACCTTTCAACCCCGCCTCCCGTAGTTAGAAAGCTGTATCCAAAATCTGTGACACCAGATTCTGCAATACTGGCACCAAAATCTGCGGCCATAGTTGCACTTAGTTCTTCTTTTGAACAGCCACCTTCAGCACGAGAAACTATGATACCTCGATCACTTAAAGTGAGTCCAGTAATGCCAAAATCAAACCCTGATAAAAATGACAAGGAGAATTCTGTGAGCACTACCATACAAGAAGATGTGAAAGAGAATGAAGTTGAAGACGAGGAAGGCCTTGTGATTTATCCATATGAACGCCTTAAAATAACAGCCACAGATCCTATAACAAGTATTGATGTGACTAAGCGAGAGACTTATCTATCATCTGCGGAGTTTAAAGAGAAATTTGGGATGTCCAAGGATGCCTTTTACAAGTTGCCCAAATGGAAACAAAACAAACTCAAAATGGCTGTTCAGTTATTCTGA 2874 0.4168 MAVSMRDLDPAFQGAGQKAGLEIWRIENFNPVPVPKSSYGKFFTGDSYVILKTTASKSGALRHDIHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVASGFKHPEAEKHKARLFVCRGKHVVHVKEVPFARASLNHDDIFVLDTESKIFQFNGSNSSIQERAKALEVVQYIKDTYHDGKCDVAAVEDGKLMADPETGEFWGFFGGFAPLPRKTAGDDDKLTDSGPPKLLCIEKGQAEPVEADSLKRELLDTNKCYILDCGFEVFVWMGRNTSLDERKSASGVADELVSGTDKLKPQIIRVIEGFETVMFRSKFDSWPQTTDVTVSEDGRGKVAALLKRQGVNVKGLLKADPVREEPQPHIDCTGHLQVWRVNGQEKILLQASDQSKFYSGNCYIFQYTYPGEDKEDCLIGTWIGKNSVEEEQASANSLASKMVESMKFLACQARIYEGNEPVQFHSILQSFIVFKGGLGEGYKTYIAGKEIPDETYNENGVALFRIQGSGPDNMQAIQVEPVASSLNSCYCYILHNGPAIFTWSGNSTSAEDQELVERMLDLIKPNLQSKPQREGSESEQFWDLLGGKSEYPSQKILREAESDPHLFSCHFSKGNLKVTEVYNFSQDDLMTEDIFILDCHLEIFVWVGQQVDSKSRMQALTIGEKFLEHDFLLEKLSRVAPIYVVMEGSEPPFFTRFFKWDSAKSAMLGNSFQRKLTLVKSGGAPLLDKPKRRTPVSYGGRSSSVPDKSQRSSRSMSVSPDRVRVRGRSPAFNALAATFENPNARNLSTPPPVVRKLYPKSVTPDSAILAPKSAAIVALSSSFEQPPSARETMIPRSLKVSPVMPKSNPDKNDKENSVSTTIQEDVKENEVEDEEGLVIYPYERLKITATDPITSIDVTKRETYLSSAEFKEKFGMSKDAFYKLPKWKQNKLKMAVQLF* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00488 957 SUPERFAMILY Actin depolymerizing proteins 382 528 - -
Lapu9g00488 957 Gene3D Severin 133 248 IPR029006 -
Lapu9g00488 957 FunFam Villin-4 385 519 - -
Lapu9g00488 957 CDD gelsolin_S2_like 138 223 - -
Lapu9g00488 957 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Lapu9g00488 957 Gene3D Severin 613 733 IPR029006 -
Lapu9g00488 957 Pfam Gelsolin repeat 150 215 IPR007123 -
Lapu9g00488 957 Pfam Gelsolin repeat 266 337 IPR007123 -
Lapu9g00488 957 Pfam Gelsolin repeat 637 712 IPR007123 -
Lapu9g00488 957 Pfam Gelsolin repeat 28 111 IPR007123 -
Lapu9g00488 957 MobiDBLite consensus disorder prediction 755 777 - -
Lapu9g00488 957 CDD gelsolin_S5_like 517 608 - -
Lapu9g00488 957 SMART VHP_1 922 957 IPR003128 GO:0003779|GO:0007010
Lapu9g00488 957 CDD gelsolin_S3_like 254 343 - -
Lapu9g00488 957 Pfam Villin headpiece domain 922 957 IPR003128 GO:0003779|GO:0007010
Lapu9g00488 957 CDD gelsolin_S1_like 12 124 - -
Lapu9g00488 957 Gene3D Severin 249 356 IPR029006 -
Lapu9g00488 957 SUPERFAMILY VHP, Villin headpiece domain 882 957 IPR036886 GO:0003779|GO:0007010
Lapu9g00488 957 SUPERFAMILY Actin depolymerizing proteins 510 613 - -
Lapu9g00488 957 SMART VILL_6 137 234 IPR007122 GO:0051015
Lapu9g00488 957 SMART VILL_6 622 719 IPR007122 GO:0051015
Lapu9g00488 957 SMART VILL_6 19 117 IPR007122 GO:0051015
Lapu9g00488 957 SMART VILL_6 519 606 IPR007122 GO:0051015
Lapu9g00488 957 SMART VILL_6 392 489 IPR007122 GO:0051015
Lapu9g00488 957 SMART VILL_6 254 344 IPR007122 GO:0051015
Lapu9g00488 957 ProSiteProfiles Headpiece (HP) domain profile. 892 957 IPR003128 GO:0003779|GO:0007010
Lapu9g00488 957 SUPERFAMILY Actin depolymerizing proteins 595 717 - -
Lapu9g00488 957 CDD gelsolin_S6_like 621 720 - -
Lapu9g00488 957 MobiDBLite consensus disorder prediction 741 782 - -
Lapu9g00488 957 FunFam Villin-like 1 895 957 - -
Lapu9g00488 957 Gene3D Severin 388 500 IPR029006 -
Lapu9g00488 957 FunFam Villin-like 1 132 247 - -
Lapu9g00488 957 FunFam Gelsolin 6 131 - -
Lapu9g00488 957 FunFam Gelsolin 520 612 - -
Lapu9g00488 957 Gene3D Villin headpiece domain 895 957 IPR036886 GO:0003779|GO:0007010
Lapu9g00488 957 MobiDBLite consensus disorder prediction 858 888 - -
Lapu9g00488 957 PANTHER VILLIN 7 947 IPR007122 GO:0051015
Lapu9g00488 957 PRINTS Gelsolin family signature 436 454 IPR007122 GO:0051015
Lapu9g00488 957 PRINTS Gelsolin family signature 644 666 IPR007122 GO:0051015
Lapu9g00488 957 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Lapu9g00488 957 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Lapu9g00488 957 PRINTS Gelsolin family signature 469 489 IPR007122 GO:0051015
Lapu9g00488 957 PRINTS Gelsolin family signature 532 552 IPR007122 GO:0051015
Lapu9g00488 957 PRINTS Gelsolin family signature 592 611 IPR007122 GO:0051015
Lapu9g00488 957 PRINTS Gelsolin family signature 673 692 IPR007122 GO:0051015
Lapu9g00488 957 SUPERFAMILY Actin depolymerizing proteins 138 238 - -
Lapu9g00488 957 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 255 427 IPR036180 -
Lapu9g00488 957 Gene3D Severin 517 612 IPR029006 -
Lapu9g00488 957 CDD gelsolin_S4_like 388 485 - -
Lapu9g00488 957 Gene3D Severin 7 132 IPR029006 -
Lapu9g00488 957 FunFam Villin-like 1 613 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00488 Lapu-Chr9 5449742 5464528 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00488 - - gmx:100808499 1809.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00488 9 5449742 5464528 Lapu3g00595 3 6135753 6152981 PCT