Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00595 ATGTCTGTTTCTATGAGAGATTTGGATCCAGCTTTCAAGGGAGCAGGCCAACAGGCTGGACTTGAAATATGGCGTATTGAAAATTTTAATCCAGTTCCAATCCCTCAGTCATCTTATGGAAAGTTTTTCACTGGGGATTCTTATATGATCATGAAGACAACTGCTTCAAAAAGTGGTGCCCTGCGTCATGATATCCATTATTGGCTTGGTAGAGAGACCAGTCAGGATGAAGCTGGTGTTGCAGCCATCAAGACAGTCGAGTTGGATGCAGCTCTAGGAGGACGAGCTGTTCAGTATCGTGAAGTACAAGGCCATGAAACTGAAAAGTTCCTCTCTTATTTCAAACCATGCATCATACCTCAAAAAGGTGGAGTTGCCTCTGGTTTTAAACATGTTGAGGCCGAAGAACATACAACACGGTTGTTTGTATGCAAAGGGAAACATGTGGTACATGTCAAAGAGGTTCCATTTGCTCGATCTTCGCTTAACCACGATGATATTTTTATTCTCGATACTGAGTCCAAAATTTTCCAATTTAATGGTTCCAATTCATCTATTCAAGAAAGGGCTAAAGCATTGGAAGTTGTACAGTTTATCAAGGATACCTACCATGATGGGAAATGTGATATCGCTTCCATTGAGGATGGAAAGTTGATGTCTGATTCTGAAACTGGAGAATTCTGGGGTTGCTTTGGGGGCTTTGCTCCTCTTCCACGGAAAACAGTCAGTGATGATGATAAGATTGCTGATTCTCATCCTCCAAAGTTACTTTGTGTTGACAAGGGGAAGGCAGAACCTATTGAAACTGATTCTTTGACAAAGGAATTGCTGGAGACAAACAAATGCTATATTATAGATTGTGGGTTCGAAGTGTTTGCATGGATGGGAAGAAACACATCCCTTGATGAAAGAAAAAGTGCAAGTGGAGCTGCAGATAAGTTAGTAAGTGGCACGGGTCGACCAAAGTCACATATAATTCGTGTAATCGAAGGATTTGAAACAGTAATGTTCAAGTCCAAGTTTGATTCTTGGCCTCAGGCAACTCATGTAATGTCTGAAGATGGTCGTGGCAAGGTAGCAGCACTTCTAAAACGTCAAGGATTGGATGTCAAGGGTCTCTTAAAATCTGAACCTGTAAAAGAAGAACCTCAACCCTACATAGATTGCACAGGATATTTGCAGGTTTGGCGTGTGAATGGCCAGGAAAAGATTCTTCTTCCAGCCACTGATCAGTCAAAATTATATAATGGAGATTGCTACATCTTTCAATATTCATATCCTGGAGAAGATAAGGAAGAGTATCTTATAGCAACATGGATTGGGAAGAGTAGTGTTGAGGAAGAGAGGGCTTCAGCTCTTTCACTAGCAAGCAAAATGGTTGAGTCAATGAAGTTTCTTCCTTCCCAGGTTCGTATCTATGAAGGCAGTGAACCAATTCAATTTCATGCAATCCTCCAAAGCTGCATTGTTTTTAAGGGTGGACTTAGTGAGGGATACAAGAATTACATTGCACAGAAGGAAATTCCAGATGAGACATACAGTGAGGATGGTGTTGCATTATTCCGCATCCAGGGATTTGGACCAGACAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCCTCCTTGAATTCCACTTATTGCTACATACTTCATAGCGGGCCCACTCTTTTTACTTGGTCCGGAGGTTTAGCAACTTCAGATGATCAAGAGCTTGTTGACAGAATGCTGGACTTGATTAAGCCGGATTTACAATGCAAATCACATAAGGAAGGCGTAGAATCGGAACTGTTTTGGGATTTGTTGGGCGGAAAATCAGAATATCCCAGTCAAAAGATCGCGAGGGATGACGAAAGTGACCCTCACCTTTTTTCTTGCAACTTCTCAAAAGGAAATTTAAAGGTGAAAGAGATATACAACTTTTCCCAGGATGATTTGATGACAGAAGATATTTACATCTTGGATTGTCACTCTGAAATCTTCGTCTGGGTTGGCCAGCAGGTTGACCCAAAGAGTAGAATGCAGGCTCTAACAATTGGTGAGAAATTTCTTGTGCACGATTTTATTCTAGAAGCATTATCTCGTGAAGCTCCAATATATATTGTCATGGAAGGTAGTGAACCACCTTTCTTCACTCGCTTCTTTAAATGGGAGTCAGCAAAATCTGCAATGCTGGGAAATTCGTTTCAAAGGAAGCTTGCAATCGTCAAAAATGGGGGAGCTCCACTTGTACTTAAACATAAACGAAGAGCATCAGTATCTTACGGGGGAAGGTCTGGTGGTGCGCCAGATAAATCTCAGCGTTCCCGCAGCATGTCTGTCAGTCCTGATCGTGTTCGTGTGAGGGGCAGATCTCCAGCCTTTAATGCACTTGCAGCTAATTTTGAGAACACAAATACTAGGAACCTTTCAACTCCACCTCCAATGGTTAGAAAACTGTACCCAAAATCTGTGGCACAGGATACAGCAAAACTGGCACCTAAATTTTCAGCCATATCTCATCTTACTTCTAGTTTTGAACCATCAGCTCGAGAAAATTTGATTCCTCGGTCACAAAAAGTGAGTTTAGTTACCGCCATATCAAACCCCGAGACACTTGCCGAGGGCGGTTCTATGAGCAGGAGATTAGAATCTCTTACCATAGAGGAGGATGTGAAAGAGGGTGAAGCTGAAGATGATGAAAGTCTTCCAGTTTACCCATATCATCGCATTAACACAGATTCTGCAGATCCTATAACAGATATTGACGTTACTAAACGAGAGGCTTATTTGTCATCTGCCGAGTTCAAAGAGAAATTAGGGATGGCTAAGAATGAATTTTACAAGTTACCAAAATGGAAACAGAACAAACTCAAGATGGCAGTTCAGTTGTTCTGA 2877 0.4161 MSVSMRDLDPAFKGAGQQAGLEIWRIENFNPVPIPQSSYGKFFTGDSYMIMKTTASKSGALRHDIHYWLGRETSQDEAGVAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQKGGVASGFKHVEAEEHTTRLFVCKGKHVVHVKEVPFARSSLNHDDIFILDTESKIFQFNGSNSSIQERAKALEVVQFIKDTYHDGKCDIASIEDGKLMSDSETGEFWGCFGGFAPLPRKTVSDDDKIADSHPPKLLCVDKGKAEPIETDSLTKELLETNKCYIIDCGFEVFAWMGRNTSLDERKSASGAADKLVSGTGRPKSHIIRVIEGFETVMFKSKFDSWPQATHVMSEDGRGKVAALLKRQGLDVKGLLKSEPVKEEPQPYIDCTGYLQVWRVNGQEKILLPATDQSKLYNGDCYIFQYSYPGEDKEEYLIATWIGKSSVEEERASALSLASKMVESMKFLPSQVRIYEGSEPIQFHAILQSCIVFKGGLSEGYKNYIAQKEIPDETYSEDGVALFRIQGFGPDNMQAIQVEPVASSLNSTYCYILHSGPTLFTWSGGLATSDDQELVDRMLDLIKPDLQCKSHKEGVESELFWDLLGGKSEYPSQKIARDDESDPHLFSCNFSKGNLKVKEIYNFSQDDLMTEDIYILDCHSEIFVWVGQQVDPKSRMQALTIGEKFLVHDFILEALSREAPIYIVMEGSEPPFFTRFFKWESAKSAMLGNSFQRKLAIVKNGGAPLVLKHKRRASVSYGGRSGGAPDKSQRSRSMSVSPDRVRVRGRSPAFNALAANFENTNTRNLSTPPPMVRKLYPKSVAQDTAKLAPKFSAISHLTSSFEPSARENLIPRSQKVSLVTAISNPETLAEGGSMSRRLESLTIEEDVKEGEAEDDESLPVYPYHRINTDSADPITDIDVTKREAYLSSAEFKEKLGMAKNEFYKLPKWKQNKLKMAVQLF* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00595 958 Gene3D Severin 7 132 IPR029006 -
Lapu3g00595 958 FunFam Villin-4 384 518 - -
Lapu3g00595 958 FunFam Villin-like 1 896 958 - -
Lapu3g00595 958 SUPERFAMILY Actin depolymerizing proteins 510 614 - -
Lapu3g00595 958 ProSiteProfiles Headpiece (HP) domain profile. 893 958 IPR003128 GO:0003779|GO:0007010
Lapu3g00595 958 Pfam Gelsolin repeat 28 111 IPR007123 -
Lapu3g00595 958 Pfam Gelsolin repeat 150 208 IPR007123 -
Lapu3g00595 958 Pfam Gelsolin repeat 410 481 IPR007123 -
Lapu3g00595 958 Pfam Gelsolin repeat 269 337 IPR007123 -
Lapu3g00595 958 Pfam Gelsolin repeat 637 711 IPR007123 -
Lapu3g00595 958 SMART VHP_1 923 958 IPR003128 GO:0003779|GO:0007010
Lapu3g00595 958 CDD gelsolin_S2_like 139 232 - -
Lapu3g00595 958 SUPERFAMILY Actin depolymerizing proteins 129 245 - -
Lapu3g00595 958 CDD gelsolin_S4_like 385 484 - -
Lapu3g00595 958 CDD gelsolin_S3_like 254 343 - -
Lapu3g00595 958 Gene3D Severin 516 611 IPR029006 -
Lapu3g00595 958 CDD gelsolin_S1_like 12 124 - -
Lapu3g00595 958 CDD gelsolin_S5_like 516 607 - -
Lapu3g00595 958 Gene3D Villin headpiece domain 896 958 IPR036886 GO:0003779|GO:0007010
Lapu3g00595 958 SUPERFAMILY Actin depolymerizing proteins 594 716 - -
Lapu3g00595 958 Gene3D Severin 247 354 IPR029006 -
Lapu3g00595 958 Gene3D Severin 612 732 IPR029006 -
Lapu3g00595 958 SMART VILL_6 137 234 IPR007122 GO:0051015
Lapu3g00595 958 SMART VILL_6 518 605 IPR007122 GO:0051015
Lapu3g00595 958 SMART VILL_6 622 718 IPR007122 GO:0051015
Lapu3g00595 958 SMART VILL_6 391 488 IPR007122 GO:0051015
Lapu3g00595 958 SMART VILL_6 19 117 IPR007122 GO:0051015
Lapu3g00595 958 SMART VILL_6 254 344 IPR007122 GO:0051015
Lapu3g00595 958 FunFam Gelsolin 6 131 - -
Lapu3g00595 958 MobiDBLite consensus disorder prediction 752 778 - -
Lapu3g00595 958 FunFam Gelsolin 519 611 - -
Lapu3g00595 958 SUPERFAMILY Actin depolymerizing proteins 381 525 - -
Lapu3g00595 958 FunFam Villin-like 1 612 733 - -
Lapu3g00595 958 Pfam Villin headpiece domain 923 958 IPR003128 GO:0003779|GO:0007010
Lapu3g00595 958 SUPERFAMILY VHP, Villin headpiece domain 884 958 IPR036886 GO:0003779|GO:0007010
Lapu3g00595 958 CDD gelsolin_S6_like 620 717 - -
Lapu3g00595 958 PRINTS Gelsolin family signature 410 426 IPR007122 GO:0051015
Lapu3g00595 958 PRINTS Gelsolin family signature 468 488 IPR007122 GO:0051015
Lapu3g00595 958 PRINTS Gelsolin family signature 591 610 IPR007122 GO:0051015
Lapu3g00595 958 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Lapu3g00595 958 PRINTS Gelsolin family signature 643 665 IPR007122 GO:0051015
Lapu3g00595 958 PRINTS Gelsolin family signature 531 551 IPR007122 GO:0051015
Lapu3g00595 958 PRINTS Gelsolin family signature 435 453 IPR007122 GO:0051015
Lapu3g00595 958 PANTHER VILLIN 6 948 IPR007122 GO:0051015
Lapu3g00595 958 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 255 394 IPR036180 -
Lapu3g00595 958 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Lapu3g00595 958 Gene3D Severin 133 246 IPR029006 -
Lapu3g00595 958 FunFam Villin-like 1 132 247 - -
Lapu3g00595 958 FunFam Villin-4 248 354 - -
Lapu3g00595 958 Gene3D Severin 387 501 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00595 Lapu-Chr3 6135753 6152981 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00595 - - gmx:100807762 1743.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00595 3 6135753 6152981 Lapu3g00595 3 6135753 6152981 ECH
Lapu3g00595 3 6135753 6152981 Lapu9g00253 9 2462392 2465135 PCT
Lapu9g00488 9 5449742 5464528 Lapu3g00595 3 6135753 6152981 PCT