Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00486 ATGGCAACTGAGAGTCCAATTAGAATCTCTGATGCTGGGGGTAAATGGCCCTCACATAAGGAAGCTACTGCTTTTGGTTCGACATCCCGTAACATGGCGACAGAGGATTTGGGTATACTTTTGAAGGGCCATAGGTTCCATGGTGGGAGAAAGGATATGGCCCCAAATCGCAGTGGCAGTGCACCTCCCAGCATGGAAGGCTCATTTTTGGCCATAGAAAACCTCGTACCTCAGCAGATCATCACCCAGAATGCAAGCTTTGCAACTCTAAGCAGTGCTATGCAAAATTGTGAGTCTGAAGAACAATTGCGAACTGATCCAGCTTATTCGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCACTTACATCCTGGGAAAATCGCCATCTAGGACGTCACATTGGCAGTTTTAGGAATAATTGGAGAATGTCTACTACAGATGATAGCGGTAAAAGTTCTTTACATTTGCCTCAAAGGACTCTTTCCACACACAAGGAGGAGTCAGAAGATGAATCACACCAACAACCATATGATGGTGAATTAATTAAGGCAAGTGGAACTTGGCATAGACCTGATGCAGCTTCATTGGCATCTCAACCCAAAAATGTGGTTGATTTAATTCAGGAGGATTTTCCTCGCACCATGTCACCTGTATATAACAAGTCTCTCTCTGAAAGTCACGGACTAGTGGATAAACCAATTGACTTAGAAGTCGGTTCTAGTTCTTCTCATGAGCCCCCTATTACTACAGTAGATGCTGCTAAATCTGCTGTAGGTGTGGATGATATAAGGGTGTCATCAATTGTTGATACCCATGCCCCAGTTGCAAGCTCATCATCTCTTGAATCCACTGGTAGCATTGGCGTTAATGACTTAGACGTTGCAACTGTTGCATCTCAACTAAAGGCTCTTGGTGTATCTAATCTACCACACTCAGAAAGTATGAGCTACGAAGAAAAATGGAAGACCAGCTACAAGAACAATTTGATGCAACGCCCAGGATTCCAACAACAAAACAATGCATCTGATATTCCTAGTGCCAATTCTCAAAATGTAAATTCTATGTATGTGGGTAGGGAACAGTTTCCTTTTAATTCAAGCAAGTTCTCCAATGTCGAGCCACTACTGCAGTCGTCTGGGTTTACACCTCCTCTATATGCCACAGCAGCTGCTTATATGAACTCAGCAAATCCATTTTACACAAATATGCAGGCCTCGGGTATATATACTCCACAATATGTTGGTGGATACACTGTAAATCCCACAGCTTTTCCTCCATATGTTACTGCATACCCTCCTCATGGTGCCGTACCATTCATTGTTGATGGAGCTACTAGTTCTAGTTATACTCCACTAACACCTGGCGTTTCAACTGGGGGAAACATTTCACATGGAACTGAAATGGCACAGACAAACAAGTACCTTGGGCAATTTGGATTTCCTCTGCAGCCTTCTTTTGGTGATCCCATGTGCATGCAATATCATCAGCAACCTTTTGTGGATGGATATAGTATTTCTGGTCATTTCGATCCACTGGCACCTAGAGCAAGTGGTGTTAACCAAATTAGCCCTTATGATTCACAAAAAAGGCCCAGCACTGCTGGTACTTATTTGGATGATAAAAAATCACCTGATCAGAGGTCTGCTGCTAATATGAACTCAAGAAGAAGTGGATTATTGATTCCTAGTTATTTTGGACACGTGCCAAACATGGGTTTTTTAATGCAGTATCCTAGTTCACCACTTCCTAGTCCAGTTTTATCAGGATACCCAGAAGGAAGTCCTGGCCTTCTAGGTGGAAATAATGAAATAAAACTTTCCCCAGCTTCTGGTAGAAATGGAGGGGTAATATCTGGATGGCAAGGTCAGAGATCATTTGACAGTGGTCATGACCCCAAAATTGTTAATTTTCTTGAAGACTTAAAATCTGGCAAAGGTCGAAGATTTGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGCTCTGATCAGCATGGAAGTCGATTTATACAGCAGAAGCTGGAAAGTTGTAGTGTTGAAGAGAAGGCATTGGTGTTTAAGGAGGTTCTTCCACATGCATCTAAATTAATGACTGATGTATTTGGTAACTACGTAATACAGAAGTTCTTTGAGTATGGAAGCCCTGAGCAGAGGAGGGAACTTGCTGATCGACTGGTTGGCCAGATACTACCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTCCGTGACCAAAACGGTAACCATGTAATTCAAAAGTGCATTGAATCGATTCCAACCAAAAAAATTAGTTTTATACTATCTGCATTTTGTGGTCAAGTTGCTATTCTATCAATGCATCCCTATGGATGCCGAGTCATACAGAGAGTTCTAGAACATTGCACAGATGAGAGTCGGTGTCAGTTTATTGTGGATGAAATCTTGGAGTCCGTTTGTGAACTTGCTCAGGACCAGTATGGTAATTATGTTACGCAGCATGTCTTGGAGAGAGGAAAGCCTCAAGAAAGGAGCCAAATTATCAGCAAGTTGTCAGGACATATTGTTGAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAAAAATGTTTGGAGTATGGTGATGCCAGTGAACGGGAGATGCTAATTGCAGAGATATTTGGGCATGGTGAACAAAGTGATAATTTATTGATAATGATGAAAGATCAATTTGCTAATTATGTGGTCCAGAAGGTCATTGATATCTGTTCTGAAAAACAGCAAGCAATGTTACTTTCTCAAGTAAGAATTCATGCTCATGCTTTGAAGAAATACACTTACGGAAAACACATTGTGGCTCGGTTGGAACATCAATTTGGAGAGAATCAAACACCTGGTTCATGA 2961 0.4147 MATESPIRISDAGGKWPSHKEATAFGSTSRNMATEDLGILLKGHRFHGGRKDMAPNRSGSAPPSMEGSFLAIENLVPQQIITQNASFATLSSAMQNCESEEQLRTDPAYSAYYSSNVNLNPRLPPPLTSWENRHLGRHIGSFRNNWRMSTTDDSGKSSLHLPQRTLSTHKEESEDESHQQPYDGELIKASGTWHRPDAASLASQPKNVVDLIQEDFPRTMSPVYNKSLSESHGLVDKPIDLEVGSSSSHEPPITTVDAAKSAVGVDDIRVSSIVDTHAPVASSSSLESTGSIGVNDLDVATVASQLKALGVSNLPHSESMSYEEKWKTSYKNNLMQRPGFQQQNNASDIPSANSQNVNSMYVGREQFPFNSSKFSNVEPLLQSSGFTPPLYATAAAYMNSANPFYTNMQASGIYTPQYVGGYTVNPTAFPPYVTAYPPHGAVPFIVDGATSSSYTPLTPGVSTGGNISHGTEMAQTNKYLGQFGFPLQPSFGDPMCMQYHQQPFVDGYSISGHFDPLAPRASGVNQISPYDSQKRPSTAGTYLDDKKSPDQRSAANMNSRRSGLLIPSYFGHVPNMGFLMQYPSSPLPSPVLSGYPEGSPGLLGGNNEIKLSPASGRNGGVISGWQGQRSFDSGHDPKIVNFLEDLKSGKGRRFELSDIIGHIVEFSSDQHGSRFIQQKLESCSVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELADRLVGQILPLSLQMYGCRVIQKALEVIELEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKKISFILSAFCGQVAILSMHPYGCRVIQRVLEHCTDESRCQFIVDEILESVCELAQDQYGNYVTQHVLERGKPQERSQIISKLSGHIVELSQHKFASNVVEKCLEYGDASEREMLIAEIFGHGEQSDNLLIMMKDQFANYVVQKVIDICSEKQQAMLLSQVRIHAHALKKYTYGKHIVARLEHQFGENQTPGS* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00486 986 ProSiteProfiles Pumilio RNA-binding repeat profile. 694 729 IPR001313 GO:0003723
Lapu9g00486 986 ProSiteProfiles Pumilio RNA-binding repeat profile. 730 765 IPR001313 GO:0003723
Lapu9g00486 986 CDD Pumilio 653 974 IPR033712 GO:0003723
Lapu9g00486 986 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 109 976 - -
Lapu9g00486 986 Gene3D - 639 983 IPR011989 -
Lapu9g00486 986 MobiDBLite consensus disorder prediction 148 181 - -
Lapu9g00486 986 SUPERFAMILY ARM repeat 642 975 IPR016024 -
Lapu9g00486 986 MobiDBLite consensus disorder prediction 165 181 - -
Lapu9g00486 986 FunFam Pumilio homolog 1 isoform 2 637 984 - -
Lapu9g00486 986 MobiDBLite consensus disorder prediction 521 558 - -
Lapu9g00486 986 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 638 978 IPR033133 GO:0003723
Lapu9g00486 986 MobiDBLite consensus disorder prediction 1 26 - -
Lapu9g00486 986 ProSiteProfiles Pumilio RNA-binding repeat profile. 839 874 IPR001313 GO:0003723
Lapu9g00486 986 MobiDBLite consensus disorder prediction 148 164 - -
Lapu9g00486 986 SMART pum_5 802 837 IPR001313 GO:0003723
Lapu9g00486 986 SMART pum_5 730 765 IPR001313 GO:0003723
Lapu9g00486 986 SMART pum_5 917 952 IPR001313 GO:0003723
Lapu9g00486 986 SMART pum_5 766 801 IPR001313 GO:0003723
Lapu9g00486 986 SMART pum_5 875 910 IPR001313 GO:0003723
Lapu9g00486 986 SMART pum_5 839 874 IPR001313 GO:0003723
Lapu9g00486 986 SMART pum_5 694 729 IPR001313 GO:0003723
Lapu9g00486 986 SMART pum_5 658 693 IPR001313 GO:0003723
Lapu9g00486 986 MobiDBLite consensus disorder prediction 525 539 - -
Lapu9g00486 986 ProSiteProfiles Pumilio RNA-binding repeat profile. 766 801 IPR001313 GO:0003723
Lapu9g00486 986 ProSiteProfiles Pumilio RNA-binding repeat profile. 875 910 IPR001313 GO:0003723
Lapu9g00486 986 Pfam Pumilio-family RNA binding repeat 844 876 IPR001313 GO:0003723
Lapu9g00486 986 Pfam Pumilio-family RNA binding repeat 777 800 IPR001313 GO:0003723
Lapu9g00486 986 Pfam Pumilio-family RNA binding repeat 734 767 IPR001313 GO:0003723
Lapu9g00486 986 Pfam Pumilio-family RNA binding repeat 806 841 IPR001313 GO:0003723
Lapu9g00486 986 Pfam Pumilio-family RNA binding repeat 699 730 IPR001313 GO:0003723
Lapu9g00486 986 Pfam Pumilio-family RNA binding repeat 879 912 IPR001313 GO:0003723
Lapu9g00486 986 Pfam Pumilio-family RNA binding repeat 662 696 IPR001313 GO:0003723
Lapu9g00486 986 Pfam Pumilio-family RNA binding repeat 923 953 IPR001313 GO:0003723
Lapu9g00486 986 ProSiteProfiles Pumilio RNA-binding repeat profile. 658 693 IPR001313 GO:0003723
Lapu9g00486 986 ProSiteProfiles Pumilio RNA-binding repeat profile. 802 838 IPR001313 GO:0003723
Lapu9g00486 986 ProSiteProfiles Pumilio RNA-binding repeat profile. 917 952 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00486 Lapu-Chr9 5408506 5418186 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00486 K17943 - gmx:100811036 1753.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00591 3 6100739 6110897 Lapu9g00486 9 5408506 5418186 PCT