Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00591 ATGGCAACTGAGAGTCCAATTAGGATCTCTGAAGCTGGTGGGAAATGGCCAACTCTTAACGAAGCTTCAACATTTGGTTCACCATCGCATCGTATGGCAACAGAGGATCTGGGTATATTCTTGAATGGCCATAGGTTCTACGGCAGTGGAAAAGATGTGGTACCTAATCGTAGTGGCAGTGCACCTCCAAGCATGGAAGGCTCGTTTCTTGCCATAGAAAACTTGTTATCCCAGAACACCACTAGAAATGCAAGCCTGGGATCTCTGAACAGAGCTGTGCAAAAATATGATAGCGGGAAAGGGTCCTTTCATTTGTCACGAGAATCACTTGCAACACACAAGGAGGAGGCTGAGGATGATTTAACCCAACAGCTGTATGATAATGAGTCAGATAAGGCTAGTGGAAAATGGCATAGACAGGATGTGGCTTCAACATCATCTAAGCACAAAAAATTAGTACTGGAAGATCTTCCTCATACCATGCCACCTGTATATAATAAGTCGCTTGGAGTGGTGGGCGAGCTAATTGATGTAGATACTGGTTCAAATTCTTCTCATGACCCTTCTGTCACTACGCTGGATGCTATAAAACCTACCGTAGGTGCAAATGAAGTAAGGGTGTCATCGTTTGTTGATTACCCTGCCCCAGTCACGAGCTCATCATCTCTCAGTTCCACTGGAAGCATGGGTTTTAATGATTTAGATGTTACAATTGTAGAATCGCAATTGAGGGCTCTCACTGTATCTAATATACCGAATTCAGAAGGTCTGAGTTATGAAGATAAATGGAAGAACAGCTTACAGAATAATTTGTTTCAACAACACCACCAACAAAACCATCCATGTGAAGTTCCTAGCTCCAATTCTCAAAGTGAAAAATGTGCATATGTTGGTATGGAGCAGCCTCCTTTCAGTCCAAGCAAGTTCTCATCTGATGTCCAGCCTGTATTGCCTGTACTGCAATCATCTGGGTATACACCTCCACTATATGCTACAGCAGCAGCTTATATGACCTCAACAAATCCATTGTACGCTAATTTTCAGGCTTCAGGTATATATTCTCCGCAATATGTAGGTGCATACCCATTTAGCCCGACAGCTGTCCCTCCATATATTGCTGCATACCCTCCTCATGGTTCTGTACCACTTGTTGATGGGGCTACTGGTTCTAGTTTTACTCCCCAAGCAGCAGGGGTTTCTTCTATTGTAGGAAACATTTCACACGGTACTGAAATGATACATGCAAACAAGGTTTTTGGACAATTTGGATTTCCTCTGCAGCCTTCTTTTGGTGAGCCTATTTACATGCAATATCATCAGCAACCTTTTGTGGAGGGATACGGTGTATCTGGTCATCTGCTGACACCTAGAGCTAGTGTTGGTGGTCAAATTGGTCCTTTTGATTCCCCAAAAAGGCCCAATAGTGGTGCTTACTTGGATGAAAAAAAATTACACAATCAGAGAAGTGGTGCTAATTTGAACTCTAATAGAGGTGGGCTAATGCATCCTGGTTATTTTGGACACCCCTCAAACATGGGTTTCGTAACCCAGTATCCAAGTTCTTCACTTTCTAGACCAGTCTTATCAGGATACCCAGAAAGTGGTCCTGGCCTTCCAAGTGGAAGGAATGAAAGGAGACCCTCTCCAGCTTCTGGTAGAAACGGAGGTTTATTATCTGGATGGCAAAGTCAGAGAGCCTTAGACAGTGATCACAACCCCAAAATTGCTATTTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGACATTATTGGACACGTAGTTGAATTTAGGCAATTCATTGTGGTTTTTAACTCCAGCACTGATCAGCATGGGAGCCGTTTTATACAGCAGAAGTTGGAAAACTGTAGTGTTGAAGAGAAGGAGTTAGTGTTCAAAGAGGTTCTTCCACATACATCTAAATTAATGACTGACGTCTTTGGCAATTATGTAATCCAAAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAAGGAGCTTGCAAATTGTCTTCGTGGTCAGATACTGCCTTTAAGTCTTCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATCAATCTTGAACAGAAAGCTCAGCTTGTTCATGAACTGGATGGAAATGTCATGAGATGTGTCCGTGACCAAAATGGGAATCATGTAATTCAGAAGTGCATTGAATCTATTCCAACTAAAAACATTGACTTTATAATATCTGCATTTCGTGGTCAAGTTGCTATTCTATCTATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTAGAGCATTGTTCAGATGAGGTTCAATGTCAGTTCATTGTGGATGAAATCTTGGAGTCAGTTTTTACTCTTGCTCAGGACCAGTATGGTAATTATGTTGCTCAGCATGTGTTGGAGAGAGGAAAGTCTCAGGAAAGGAGCCAAATTATTAGCAAGCTTTCAGGACATATTGTTCAACTAAGCCAGCATAAATTTGCATCAAATGTTGTTGAAAAATGCTTGGAGTATGGTGATTCCACTGAACGACAGCTATTAATTGCAGAGATTGTTGGACATGACAAACAACATGATAATTTGTTGACAATGATGAAAGACCAATTTGCAAACTATGTGATCCAGAGGGTTCTTGAGATCTGTTCTGAAAATCAAAGAGCAATGTTACTTTCTCGCATAAGGCTTCATGCTCATGCTTTGAAGAAATACACTTACGGAAAACACATTGTGGCTCGGTTCGAACAGCTACTTGGGGAAGGTGTGTGTACACGTAGTACTTTGGTTTAG 2805 0.4175 MATESPIRISEAGGKWPTLNEASTFGSPSHRMATEDLGIFLNGHRFYGSGKDVVPNRSGSAPPSMEGSFLAIENLLSQNTTRNASLGSLNRAVQKYDSGKGSFHLSRESLATHKEEAEDDLTQQLYDNESDKASGKWHRQDVASTSSKHKKLVLEDLPHTMPPVYNKSLGVVGELIDVDTGSNSSHDPSVTTLDAIKPTVGANEVRVSSFVDYPAPVTSSSSLSSTGSMGFNDLDVTIVESQLRALTVSNIPNSEGLSYEDKWKNSLQNNLFQQHHQQNHPCEVPSSNSQSEKCAYVGMEQPPFSPSKFSSDVQPVLPVLQSSGYTPPLYATAAAYMTSTNPLYANFQASGIYSPQYVGAYPFSPTAVPPYIAAYPPHGSVPLVDGATGSSFTPQAAGVSSIVGNISHGTEMIHANKVFGQFGFPLQPSFGEPIYMQYHQQPFVEGYGVSGHLLTPRASVGGQIGPFDSPKRPNSGAYLDEKKLHNQRSGANLNSNRGGLMHPGYFGHPSNMGFVTQYPSSSLSRPVLSGYPESGPGLPSGRNERRPSPASGRNGGLLSGWQSQRALDSDHNPKIAIFLEELKSGKGRRFELSDIIGHVVEFRQFIVVFNSSTDQHGSRFIQQKLENCSVEEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANCLRGQILPLSLQMYGCRVIQKALEVINLEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKNIDFIISAFRGQVAILSMHPYGCRVIQRVLEHCSDEVQCQFIVDEILESVFTLAQDQYGNYVAQHVLERGKSQERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDSTERQLLIAEIVGHDKQHDNLLTMMKDQFANYVIQRVLEICSENQRAMLLSRIRLHAHALKKYTYGKHIVARFEQLLGEGVCTRSTLV* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00591 934 SMART pum_5 862 897 IPR001313 GO:0003723
Lapu3g00591 934 SMART pum_5 601 638 IPR001313 GO:0003723
Lapu3g00591 934 SMART pum_5 711 746 IPR001313 GO:0003723
Lapu3g00591 934 SMART pum_5 747 783 IPR001313 GO:0003723
Lapu3g00591 934 SMART pum_5 784 819 IPR001313 GO:0003723
Lapu3g00591 934 SMART pum_5 675 710 IPR001313 GO:0003723
Lapu3g00591 934 SMART pum_5 639 674 IPR001313 GO:0003723
Lapu3g00591 934 SMART pum_5 820 855 IPR001313 GO:0003723
Lapu3g00591 934 ProSiteProfiles Pumilio RNA-binding repeat profile. 601 638 IPR001313 GO:0003723
Lapu3g00591 934 CDD Pumilio 589 918 IPR033712 GO:0003723
Lapu3g00591 934 MobiDBLite consensus disorder prediction 525 560 - -
Lapu3g00591 934 Pfam Pumilio-family RNA binding repeat 679 712 IPR001313 GO:0003723
Lapu3g00591 934 Pfam Pumilio-family RNA binding repeat 612 641 IPR001313 GO:0003723
Lapu3g00591 934 Pfam Pumilio-family RNA binding repeat 824 857 IPR001313 GO:0003723
Lapu3g00591 934 Pfam Pumilio-family RNA binding repeat 722 746 IPR001313 GO:0003723
Lapu3g00591 934 Pfam Pumilio-family RNA binding repeat 646 672 IPR001313 GO:0003723
Lapu3g00591 934 Pfam Pumilio-family RNA binding repeat 866 899 IPR001313 GO:0003723
Lapu3g00591 934 Pfam Pumilio-family RNA binding repeat 789 821 IPR001313 GO:0003723
Lapu3g00591 934 Pfam Pumilio-family RNA binding repeat 751 786 IPR001313 GO:0003723
Lapu3g00591 934 ProSiteProfiles Pumilio RNA-binding repeat profile. 675 710 IPR001313 GO:0003723
Lapu3g00591 934 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 574 923 IPR033133 GO:0003723
Lapu3g00591 934 ProSiteProfiles Pumilio RNA-binding repeat profile. 747 783 IPR001313 GO:0003723
Lapu3g00591 934 ProSiteProfiles Pumilio RNA-binding repeat profile. 820 855 IPR001313 GO:0003723
Lapu3g00591 934 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 222 921 - -
Lapu3g00591 934 SUPERFAMILY ARM repeat 610 919 IPR016024 -
Lapu3g00591 934 ProSiteProfiles Pumilio RNA-binding repeat profile. 711 746 IPR001313 GO:0003723
Lapu3g00591 934 FunFam Pumilio homolog 1 isoform 2 574 929 - -
Lapu3g00591 934 ProSiteProfiles Pumilio RNA-binding repeat profile. 639 674 IPR001313 GO:0003723
Lapu3g00591 934 Gene3D - 576 925 IPR011989 -
Lapu3g00591 934 ProSiteProfiles Pumilio RNA-binding repeat profile. 856 897 IPR001313 GO:0003723
Lapu3g00591 934 MobiDBLite consensus disorder prediction 463 497 - -
Lapu3g00591 934 ProSiteProfiles Pumilio RNA-binding repeat profile. 784 819 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00591 Lapu-Chr3 6100739 6110897 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00591 K17943 - gmx:100819166 1456.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00591 3 6100739 6110897 Lapu9g00486 9 5408506 5418186 PCT