Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00475 ATGCCACCGGCGCTGTCCGATCCGTTGTCAGCGACTGCAGCCTGCTCCGACGCCGTTTTGAAGCGATCGGCGCCAGATAATCGGCGATTCGGCGATCTTAGAGGGCTGCGGTGGCGGATAAATCTTGGGGTGTTGCCGTGTTCGACTTCGACTTCAATTGATGATCTTCGTCGAGTCACCGCTAATTGTAGAAGAAGGTATGCTAGCTTGAGGAGGCGCCTTCTGGTTGAACCACTTGTTCCAAAGGATGGAACTAATTCTCCAAGTCTTGTCATTGATAATCCACTTTCACTAAATCCAGATAGTCCATGGGGTCGCTTTTTCCGCAATGCAGAACTGGAGAGAATGGTGGATCAGGATTTATCACGATTATACCCAGAACATGGCAGTTATTTTCAGACACCAGGATGCCAAAGCATGTTGAGACGAATTTTGTTACTGTGGTGTCTCAGGCACCCAGAATGTGGTTATAGACAAGGAATGCATGAGTTACTTGCTCCTCTGCTTTATGTTCTGCATGTTGATTTGGAGCGTCTCTCAGAATATCGGAAGCTTTATGAAGATCACTTTACAGACAGATTTGATGGCCTGTTATGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAAAAAGTCTCGAGACTTGATGGAGGATGGATTTGATTCCCATGGAAATTCCATGAAAGTCAATAGTCTCGCTGAACTTGATCCTGAGATACAGAACATTGTATTACTAAGTGATGCTTATGGAGCTGAAGGTGAATTGGGCATTGTTTTATCTGAGAAATTCACGGAACATGATGCATACTGTATGTTTGAGGCTTTAATGAATGGGGCCCATGGTTCAGTTGCAATGGCTGATTTCTTCTCTTCCTCCCCTGTATCTGGGTCCCATAGTGGCCTTCCTCCTGTGATTGAAGCTTCTACTGCATTGTATTATTTGTTGTCTCAAGTAGATTCATCTCTTCATAGCCATCTTTTTGATCTTGGGGTTGAACCCCAATACTTTTCTCTTCGATGGCTGCGAGTTTTATTTGGACGAGAATTTTCACTCGCCAACCTCTTGATCATTTGGGATGAGATATTTGCATCGGAGAATAACAGCAATGAAAGATGTTCTGATGACTGCGAGTTCAGAATCTTAACTTCACCCCGTGGAGCATTTATCTCAGCTATGGCAGCAGCAATGCTACTTCATTTAAGATCTTCACTGCTTGCAACCGAAAACCCTACAAGGTGTCTCCAGAGATTATTAAACTTCCCTGAAGACATTAATATTGAAAAACTACTAGAGAAGGCCAAATCCTTGCAGGCTCTTGCACTAAGTGTTGATATTTCATCCTCGTCACTTTTGTTTATGGGGTTCCATTACCAAAGTAAATCGGTGTATAGTAGATCTGTGACCCTTCCATCTGAATCCATGTCTCCGAAAACTCCTCTGAATTTGTTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGCCCTCAAGGCTGAAGAACATAAGCAAGATGATCTAGAAAAACAGGTTCCCACTCGGAAAAAGGGATGGACAGAAAAAGTGAAATTCAGTCTGAGAAGAACAGAATCTGACCCTCCTAAGTCAAGGTTTCAGAGTGGCAAAAATTTTAGGCGCAGCTTGTTGCAAGATCTTCGGAAGGCACTTGGCTCAGATGAAGATGCAGAGAAAATGCAGCCAGATGAAACCCTATGCCAGAATGATAGTCCTTCTGAAGCAGTTGAAGTACAAGAAGACAGTAGCTGTAATGGTGACAACAATTACTCATCCGATGATAGATCTCCAAGTGGAAATTCTGGCAGTGAGGAAGACTTGTCTATATTTTCTGACCCAACTAGCCCCCCTAATGAAGCCAATGATCCTGAAATAATATCTGGGAAAAGTAGTGTTGCATCTAATTCATCCCTAGACGAACACAATGAAGCATCAAGTATTAATTCGCCATTACCAATTTCTAATCCTCCTGAGAACATTTCTCAGACATCATTCTGCAATACAGGAAATTCTGAATGCAATGAAACTGCAGATACCAGTCCCAATGATCAACCCCTTCCCATCTCTGATATTCCTGAGCACATTTCTCAGACATCATTCTGCGATACAGGAAATTCTGAATGCAATGAAACTTCAGATACCAGTCCCAATGATCCACAGGTTCCAATTTCCTGTCCTCCTGAGAACGTACCCCTGATGTCAGGATGCAATAACAATGATGTCGAAAATAAAGCCACACCTCCTAAAGAGAAAAGGCATAATAAGTTGCAGTGGCTTTGGCCCTTTGGACGGAATACTGTTGAAGCTATATCTGAGAAAGCCAGTGCTGCCGAATCTACCAACCGTGGTAGCGCTCAAAATAATGGTAGCACTCAAAATAATGCGCCTCAAGCCGCCTCATCCACAAGTAATGATCATGGTGGTTCTGTTGGCTGCAGAGGAGAATCGGTGGACCAGAATGTTATGGGCACTTTGAAGAATATTGGGCAGTCTATGCTTGACCATATTCAGGTAATTGAATCTGTTTTCCAACAAGACCGCAAAGGCCAGGTTACTGCCATGACAGCTCTCAAAGAGCTTCGGAAAATTAGCAATCTTTTGTCAGAGATGTGA 2628 0.4315 MPPALSDPLSATAACSDAVLKRSAPDNRRFGDLRGLRWRINLGVLPCSTSTSIDDLRRVTANCRRRYASLRRRLLVEPLVPKDGTNSPSLVIDNPLSLNPDSPWGRFFRNAELERMVDQDLSRLYPEHGSYFQTPGCQSMLRRILLLWCLRHPECGYRQGMHELLAPLLYVLHVDLERLSEYRKLYEDHFTDRFDGLLCQENDLSYSFDFKKSRDLMEDGFDSHGNSMKVNSLAELDPEIQNIVLLSDAYGAEGELGIVLSEKFTEHDAYCMFEALMNGAHGSVAMADFFSSSPVSGSHSGLPPVIEASTALYYLLSQVDSSLHSHLFDLGVEPQYFSLRWLRVLFGREFSLANLLIIWDEIFASENNSNERCSDDCEFRILTSPRGAFISAMAAAMLLHLRSSLLATENPTRCLQRLLNFPEDINIEKLLEKAKSLQALALSVDISSSSLLFMGFHYQSKSVYSRSVTLPSESMSPKTPLNLLPDSYWEEKWRVALKAEEHKQDDLEKQVPTRKKGWTEKVKFSLRRTESDPPKSRFQSGKNFRRSLLQDLRKALGSDEDAEKMQPDETLCQNDSPSEAVEVQEDSSCNGDNNYSSDDRSPSGNSGSEEDLSIFSDPTSPPNEANDPEIISGKSSVASNSSLDEHNEASSINSPLPISNPPENISQTSFCNTGNSECNETADTSPNDQPLPISDIPEHISQTSFCDTGNSECNETSDTSPNDPQVPISCPPENVPLMSGCNNNDVENKATPPKEKRHNKLQWLWPFGRNTVEAISEKASAAESTNRGSAQNNGSTQNNAPQAASSTSNDHGGSVGCRGESVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRKGQVTAMTALKELRKISNLLSEM* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00475 875 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 32 326 IPR035969 -
Lapu9g00475 875 Gene3D - 305 444 - -
Lapu9g00475 875 SMART tbc_4 20 409 IPR000195 -
Lapu9g00475 875 MobiDBLite consensus disorder prediction 558 696 - -
Lapu9g00475 875 MobiDBLite consensus disorder prediction 706 725 - -
Lapu9g00475 875 FunFam TBC1 domain family member 5 305 446 - -
Lapu9g00475 875 Coils Coil 872 875 - -
Lapu9g00475 875 MobiDBLite consensus disorder prediction 778 814 - -
Lapu9g00475 875 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 108 283 - -
Lapu9g00475 875 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 302 438 IPR035969 -
Lapu9g00475 875 MobiDBLite consensus disorder prediction 741 761 - -
Lapu9g00475 875 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 28 434 - -
Lapu9g00475 875 MobiDBLite consensus disorder prediction 706 724 - -
Lapu9g00475 875 MobiDBLite consensus disorder prediction 778 820 - -
Lapu9g00475 875 MobiDBLite consensus disorder prediction 525 544 - -
Lapu9g00475 875 Pfam Rab-GTPase-TBC domain 262 367 IPR000195 -
Lapu9g00475 875 Pfam Rab-GTPase-TBC domain 114 172 IPR000195 -
Lapu9g00475 875 ProSiteProfiles TBC/rab GAP domain profile. 28 366 IPR000195 -
Lapu9g00475 875 MobiDBLite consensus disorder prediction 569 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00475 Lapu-Chr9 5209769 5215291 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00475 K18469 - gmx:100812967 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00475 9 5209769 5215291 Lapu9g00475 9 5209769 5215291 ECH
Lapu3g00582 3 5954816 5965380 Lapu9g00475 9 5209769 5215291 PCT