Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00582 ATGCCGCCGGCTGTGATGGATCCACCATTGCCGGAATCGTCGTCGGTGCTGTCTTTAACCTCCACCCTTTTACCGGAGCCGGATAATCGGCGATTCGGGGATCTTAGAGGTCTGCAGTGGCGTATAAATCTTGGGGTATTGCCATCTTCTTCCATTGATGAACTTCGTCGTGCCACAGCTAATTCTAGAAGGAGGTATGCCAGTTTCAGAGGGCGCCTTCTGGTTGATCCTCATACTCTAAAGGATGAAAGTAGTTCGCCCAATCTTGTCATGGATAACCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTCCGCAAAGCAGAGATAGAGAAGATGATTGATCAGGATTTATCACGTTTATACCCAGAACATGGCAACTATTTCCAGACGCCAGGATGCCAAGGCATATTGAGACGAATTTTATTACTATGGTGTCACAGACACCCAGAGTGTGGTTACAGACAAGGAATGCATGAATTACTTGCTCCGGTGCTTTATGTACTCCAATATGATGTGGAGTGTCTTTCAGAAATTCGCAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGACCTAATTTGTCAAGAGAATGATCTTTCTTACAACTTTGATTTTAGAAAAGCTTCAGACTCGATGGACGATAGAATAGACTCCAATGGAAATGCAATGAAAATCAAGAGTCTTGATGAGCTTGACCCGAAGATACAGAACATTGTATTGCTAAGTGACGCTTATGGGGCAGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATCGAACATGATGCTTATTGTATGTTTGATGCTTTGATGAATGGGGATCGTGGTTCAATTGCAATGATCGATTTCTTCTCTTATTCCCCTTTGCCTGGGTCCCATACCGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCATTGTATCATTTGTTGTCTCATGTGGATTCATCTCTGCATGGCCATCTTGTTGATCTCGGGGTTGAACCCCAGTACTTTGCTCTTCGCTGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTCAGCAACCTTTTAATAATCTGGGATGAAATATTTTTATCTGATAATAGTAAAGTGGAAAAACATGATGAGGACAATGCAGACTCTGGTTTTAGGATCTTCAATTCGTCTCGTGGAGCATTTATCTCAGCTATGGCTGTAGCAATGATGCTTCATTTAAGATCTTCGCTTCTTGCTGCTGAAAATCCCACAACCTGTCTCCAGAGATTATTAAACTTCCCTGAGAACACTGATATTGAAAAGCTGATAGAGAAGGCTAAATCCTTGCAGGCTCTTGCATTAAGTACTGAGATTTCATCCTCAAGGCCTTCTTTATTCGAGTATCATAACCAGGCTAAACCAGCTATTGCAAGATCTCGCACCCTTTCATCTGAATCAATCTCTCCAAAAACTCCTTTGAATTTGGTACCTGAGAGCTACTGGGAAGAAAAGTGGAGAGTTGTCCACAAGGCTGAGGAACTCAAACAAGACGCAGTAGAAAAACAGGTTCCAACTCGGAAGAAGGGATGGACAGAAAAGGTAAAGTTCAGTTTGAGAAGAACAGAATCTGACCCCTCTTCACCAAGGTCTAAGAGTGGTAAAAAAGAATCCAAGTCACCAGTTAGGCGCAGTTTGTTGGAAGATCTGTCTAAAGAACTTGGCTCTGAGGAATATACTGAAAAACTCAGCAGTCATGATACTCTGCCAGCAACAGTTGAAGAGGAGCAACGGGAAGACTGTTCCGAATGCAGCAACAGTTATTCTCCTGGAGATAGATGTCTAAGTCGAAACACTAGTGTGGAAAACTCACCTGTTATTTCTTGCTCAGTTAGCCCTCCTAACGAGGCCGATGATCACAAAAATGACTGTGAGAAGAGTAGTGTTGGGTCTAATTTATCCCTTAATGGAATTAATGAAGCCTCACTTGGTAGTCCCCTCGATTCACCTCTTCCAATCTCTGATCATCCTGAGAACGTATCAAATACAACAGGGGGCAATAATATTAACAATTCTGCTGGAAATTCAACCACGCATTCCAAGGAAAGAAAATTGAGCAGATTTCAGTGGCTATGGAAGTTTGGGCGGGGTAATAGCGAGTTTATTTTAGAGAAAGGAAGTGATACTTCTGAGGCAGTAAAACCTGCCAACAGCTGTGATAATCAAAGCTATACAATACCTTCTACAGCCAATGGGCATTGTAGTTCTCTTAGTTGCATAGGGGAATCTACAGAGCAGAATGTGACGGGCAATGTGAGGAATATTGGGCAGTCAATGCTTGAGCATATCCAGGTGATAGAGAGTGCTTTCCAACAGTGGGGCGAGGGAGCATCATTGGAGAACATGTCTAAAAATGTTGTGGTTGGTGAAGGGCAGGTTACTCCCATGTCAGCTCTGAAGGAGCTACGTAAAATTGGCAATCTTTTGTCTGAGATGTGA 2466 0.4282 MPPAVMDPPLPESSSVLSLTSTLLPEPDNRRFGDLRGLQWRINLGVLPSSSIDELRRATANSRRRYASFRGRLLVDPHTLKDESSSPNLVMDNPLSQNPDSTWSRFFRKAEIEKMIDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCHRHPECGYRQGMHELLAPVLYVLQYDVECLSEIRKLYEDHFTDRFDDLICQENDLSYNFDFRKASDSMDDRIDSNGNAMKIKSLDELDPKIQNIVLLSDAYGAEGELGIVLSEKFIEHDAYCMFDALMNGDRGSIAMIDFFSYSPLPGSHTGLPPVIEASAALYHLLSHVDSSLHGHLVDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFLSDNSKVEKHDEDNADSGFRIFNSSRGAFISAMAVAMMLHLRSSLLAAENPTTCLQRLLNFPENTDIEKLIEKAKSLQALALSTEISSSRPSLFEYHNQAKPAIARSRTLSSESISPKTPLNLVPESYWEEKWRVVHKAEELKQDAVEKQVPTRKKGWTEKVKFSLRRTESDPSSPRSKSGKKESKSPVRRSLLEDLSKELGSEEYTEKLSSHDTLPATVEEEQREDCSECSNSYSPGDRCLSRNTSVENSPVISCSVSPPNEADDHKNDCEKSSVGSNLSLNGINEASLGSPLDSPLPISDHPENVSNTTGGNNINNSAGNSTTHSKERKLSRFQWLWKFGRGNSEFILEKGSDTSEAVKPANSCDNQSYTIPSTANGHCSSLSCIGESTEQNVTGNVRNIGQSMLEHIQVIESAFQQWGEGASLENMSKNVVVGEGQVTPMSALKELRKIGNLLSEM* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00582 821 MobiDBLite consensus disorder prediction 636 652 - -
Lapu3g00582 821 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 34 325 IPR035969 -
Lapu3g00582 821 MobiDBLite consensus disorder prediction 522 591 - -
Lapu3g00582 821 SMART tbc_4 27 411 IPR000195 -
Lapu3g00582 821 MobiDBLite consensus disorder prediction 522 690 - -
Lapu3g00582 821 FunFam TBC1 domain family member 5 304 448 - -
Lapu3g00582 821 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 31 438 - -
Lapu3g00582 821 ProSiteProfiles TBC/rab GAP domain profile. 30 365 IPR000195 -
Lapu3g00582 821 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 96 280 - -
Lapu3g00582 821 MobiDBLite consensus disorder prediction 664 688 - -
Lapu3g00582 821 Pfam Rab-GTPase-TBC domain 111 196 IPR000195 -
Lapu3g00582 821 Pfam Rab-GTPase-TBC domain 265 366 IPR000195 -
Lapu3g00582 821 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 300 440 IPR035969 -
Lapu3g00582 821 Gene3D - 304 448 - -
Lapu3g00582 821 MobiDBLite consensus disorder prediction 592 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00582 Lapu-Chr3 5954816 5965380 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00582 K18469 - gmx:100816501 1310.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00582 3 5954816 5965380 Lapu3g00582 3 5954816 5965380 ECH
Lapu3g00582 3 5954816 5965380 Lapu9g00475 9 5209769 5215291 PCT