Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00472 ATGGGAACGTTTCATAGCTTCAGAAAAGCCTATGGAGCTCTCAAGGACTCTACCAAGGTTGGCCTTGCCAAAGTCAATAGCGAATACAAGGAGTTGGATATTGCAATTGTAAAGGCTACCAATCACGTCGAATACCCTCCCAAGGAACGTCATGTTCGAAAAATATTTTATGCGACATCAGCACACCAGCCACGAGCAGATGTGTCATACTGCATTCACAAACTTTCTAAGAGACTTTCCAAAACACGAAGCTGGATAGTTGCCATAAAGACATTAATAGTCATTCATAGGACTTTAAGAGAGGGTGATCCTACTTTTAGAGAAGAGATTCTTAACTACTCACGCAGGGGACATATTCTCCAAATATCCAATTTCAAAGATGATTCAAGCCCCCAAGCTTGGGATTGTTCTGCATGGGTTCGAACCTATGCACTATTTCTGGAAGAAAGACTTGAATGCTTTAGAGTGCTTAAATATGATATAGAATCAGAACGTTTAACAAAAGCATCACCAGCAACTAAATCACATAGTAGAACTCGATCATTGGCTAATGAAGATCTGTTGGGGCAGTTACCTGCACTACAACAACTTCTATATCGCCTTATTGCTTGTCAGCCTGAAGGATGCTCTTATAGCAACTATCTAGTGCAGTATGCATTGGCCCTGGTTTTGAAAGAAAGTTTCAAAATATACTGTGCACTCAATGATGGAATCATCAATCTCGTGGATATGTTCTTCGATATGACAAGGCATGATGCAGTGAAGGCTCTAAACATTTATAAAAGAGCTGGTCAACAGGCTGAGAATCTTGCTGACTTCTATGAATATTGCAAGGGCTTGGAACTTGCTAGGAATTTCCAGTTTCCAACACTGAGACAGCCACCTCCCTCTTTCCTTGCAACTATGGAAGAATACATTAGAGAAGCACCTCAAACAGGATATGTTAACAAGAGATTGGAATATGAAGAAAATGATGATTCATCTAAAGAAGATTCAGAATCCAATGAAACTGAAGAGCCTCAAGAAACTGAAGAACCATATGAGGAAGTCAACGAGGAAGATTCAGTAGCAGAGGAAGAGGCACAATCCAAGGAGGAGGAGGAGGTGGAGGTTGAGCCTCCTCCTTTGATATCAACTGATGATGGAGCAGATGATTTGTTGGGACTCAATGAAATAAATCCAAGAGCTATGGAACTGGAGAATAACAATGCTCTGGCTCTTGCAATTGTACCACCTGGTGGAAGTGCTCCAAACAATCTTGCTTTGAGTAACATTGATGGCACTACTGGTTGGGAACTTTCGTTAGTTACAACACCAAGTAACCATACCAGTGAAGCCACAGATCGCAGAATGGCCGGTGGTTTTGATAAGCTATTATTGGACAGTCTGTATGAAGATGAAAGTGCCAGGAGACAACTTCAACTTCAAAATGCAGGTTATGGACATGGGGGAACCATGGATGCAAATAACCCTTTTGATCATTATAATAACCAACAAGATCCATTTGCAATGTCCAACAACATAGCACCCCCAACCAACGTGCAAATGGCAATGGCTCAACAACAACAACAAATGATGTTGCAACAGCAACAAATGATGTACCAACAACCACCTCAACAACAACAACATAACATGATGATGGTCCCTCACCAGCAGCAACCACATAACCAATACTCTCAACAGATGCAGAATTCAGGTTCTCATAATCCCTTTGGAGATCCTTTACCAGTACCAATCTATAATCAGAATTCCATGCCCCAACAAGGAAATTACAATTTAATGTAG 1785 0.4106 MGTFHSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHVRKIFYATSAHQPRADVSYCIHKLSKRLSKTRSWIVAIKTLIVIHRTLREGDPTFREEILNYSRRGHILQISNFKDDSSPQAWDCSAWVRTYALFLEERLECFRVLKYDIESERLTKASPATKSHSRTRSLANEDLLGQLPALQQLLYRLIACQPEGCSYSNYLVQYALALVLKESFKIYCALNDGIINLVDMFFDMTRHDAVKALNIYKRAGQQAENLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQTGYVNKRLEYEENDDSSKEDSESNETEEPQETEEPYEEVNEEDSVAEEEAQSKEEEEVEVEPPPLISTDDGADDLLGLNEINPRAMELENNNALALAIVPPGGSAPNNLALSNIDGTTGWELSLVTTPSNHTSEATDRRMAGGFDKLLLDSLYEDESARRQLQLQNAGYGHGGTMDANNPFDHYNNQQDPFAMSNNIAPPTNVQMAMAQQQQQMMLQQQQMMYQQPPQQQQHNMMMVPHQQQPHNQYSQQMQNSGSHNPFGDPLPVPIYNQNSMPQQGNYNLM* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00472 594 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Lapu9g00472 594 Coils Coil 347 367 - -
Lapu9g00472 594 FunFam Putative clathrin assembly protein 172 320 - -
Lapu9g00472 594 SMART enth_2 30 161 IPR013809 -
Lapu9g00472 594 SUPERFAMILY GAT-like domain 177 308 - -
Lapu9g00472 594 Gene3D ANTH domain 173 324 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Lapu9g00472 594 FunFam Clathrin assembly protein AP180 6 161 - -
Lapu9g00472 594 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 526 IPR045192 GO:0048268|GO:0072583
Lapu9g00472 594 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Lapu9g00472 594 Gene3D - 6 161 IPR008942 -
Lapu9g00472 594 CDD ANTH_N 32 154 - -
Lapu9g00472 594 MobiDBLite consensus disorder prediction 326 367 - -
Lapu9g00472 594 Pfam ANTH domain 31 308 IPR011417 GO:0005543
Lapu9g00472 594 MobiDBLite consensus disorder prediction 313 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00472 Lapu-Chr9 5185974 5197336 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00472 K20044 - gmx:100786060 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00472 9 5185974 5197336 Lapu9g00472 9 5185974 5197336 ECH
Lapu3g00581 3 5947040 5952662 Lapu9g00472 9 5185974 5197336 PCT