Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00581 ATGGGAACGTTCCGGAGCTTAAGAAAGGCCTACGGCGCTCTCAAAGACTCTACCAAGGTTGGCCTAGCCAAGGTCAATAGCGAATACAAGGATTTGGATATTGCTATTGTGAAGGCTACCAGTCATGTAGAATATCCTCCTAAGGAACGTCATGTCAGAAAGATATTCTATGCAACTTCAGCACACCAACCACGGGCAGATGTGGCTTACTGCATACACACACTTGCTAGGAGGCTTGCAAAGACACGGAATTGGATAGTTGCTGTAAAGACATTGATAGTCATTCATAGAATATTGAGAGAGGGTGATCCCACTTTCAAAGAAGACCTCATAAACTATGCGCGCAGGGGACGTTTTCTTCAAATATCCAATTTCAAAGATGACTCAAGTCCTCAAGCTTGGGACTGTTCTGCATGGGTTCGAACCTATGCACTATTTTTAGAAGAAAGGCTTGAATGTTTTAGAATCCTTAAATATGACATCGAGGCTGAGCGTTTAACAAAACCATCACCCATTATAACTAAGGGGCATAGCAGAACACAGTCGTTGAGTAGGGAAGGGCTATTGGAGCAGCTGCCTGCACTGCAGCAGCTTCTATACCGCCTGGTTGGTTGTCAGCCTGAAGGTTCGGCTCTCAGCAATTATCTAATACAGTACGCACTGGCCTTGGTATTGAAAGAGAGCTTCAAAATATATTGTGCCCTGAATGATGGAATCATAAATCTTGTGGATGTGTTCTTTGATATGCCAAAATATGATGCAATCAAGGCGTTACATATTTATACAAGAGCTGGCCAACAGGCTGATAATCTTGCCTACTTCTATGAATACTGCAAGAGATTGGACCTTGCTAAGAATTTTCAATTTCCAATCTTGAGACAGCCACCTGTTTCTTTTCTTGCCACGATGGAAGAATACATTAAAGAAGCACCCTTGAATGCATCTAATAGACTGGAGCATCACGAAAATGATCAATCACCTCAAAAGGAAGCCGAACCCAAAGAATCTGAAGAGGCTCAAGCAAATGAAAAACCAGATGAAGAAGACAATGAGGAAGAACCGGTGGATAAAGATGAAACAGGGCCTAAGGAAGAGGAAGTGGAACTTCCTCCTTTGATATCAACTGATACCACTGATGATTTGCTGGGTCTAATCGAAATAAATCCGAAAGCCCAGGAACTAGAAGAAAGCAATGCTTTGGCGCTAGCAATTGTACCACCCGGAGGAGATAAATCAAGCAATCTTGCTTTGGCTAACATAAATGGAACTTCTGGTTGGGAACTTGCACTGGTCACAACACCAAGTAACCATACAAGCCAAGCGCCAGATCGCAAAATGGCTGGTGGGTTTGACAAGCTATTACTAGACAGTTTGTATGAAGATGAAAACGCAAGGAGACAACTTCAACTCCGAAATGCAGGCTATGGATATGAGGAAATGGATACACATAATCCATTCAATCATCATAATCAGCAAGATCCATTTGCAATGTCCAACAACATAGCACCTCCAGCCAATGTGCAAATGGCATTCATGGCTCAGCAACAGCAACAACATAACATGATGGTCCCTTACCAGTATCCACAGAGTCAATACCATCAACAAATGCCAGTTGTGGGTTCTTTTAATCCATTTGATGATCCCTTACCAGTTCCCACTCATACTTATAATTCCATGAATCATCAAGGAAACTACCATTTAATGTAG 1707 0.4236 MGTFRSLRKAYGALKDSTKVGLAKVNSEYKDLDIAIVKATSHVEYPPKERHVRKIFYATSAHQPRADVAYCIHTLARRLAKTRNWIVAVKTLIVIHRILREGDPTFKEDLINYARRGRFLQISNFKDDSSPQAWDCSAWVRTYALFLEERLECFRILKYDIEAERLTKPSPIITKGHSRTQSLSREGLLEQLPALQQLLYRLVGCQPEGSALSNYLIQYALALVLKESFKIYCALNDGIINLVDVFFDMPKYDAIKALHIYTRAGQQADNLAYFYEYCKRLDLAKNFQFPILRQPPVSFLATMEEYIKEAPLNASNRLEHHENDQSPQKEAEPKESEEAQANEKPDEEDNEEEPVDKDETGPKEEEVELPPLISTDTTDDLLGLIEINPKAQELEESNALALAIVPPGGDKSSNLALANINGTSGWELALVTTPSNHTSQAPDRKMAGGFDKLLLDSLYEDENARRQLQLRNAGYGYEEMDTHNPFNHHNQQDPFAMSNNIAPPANVQMAFMAQQQQQHNMMVPYQYPQSQYHQQMPVVGSFNPFDDPLPVPTHTYNSMNHQGNYHLM* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00581 568 SMART enth_2 30 161 IPR013809 -
Lapu3g00581 568 FunFam Clathrin assembly protein AP180 6 161 - -
Lapu3g00581 568 FunFam Putative clathrin assembly protein 173 321 - -
Lapu3g00581 568 MobiDBLite consensus disorder prediction 356 370 - -
Lapu3g00581 568 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Lapu3g00581 568 MobiDBLite consensus disorder prediction 314 341 - -
Lapu3g00581 568 Gene3D - 6 161 IPR008942 -
Lapu3g00581 568 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Lapu3g00581 568 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 518 IPR045192 GO:0048268|GO:0072583
Lapu3g00581 568 SUPERFAMILY GAT-like domain 178 309 - -
Lapu3g00581 568 CDD ANTH_N 32 154 - -
Lapu3g00581 568 SUPERFAMILY ENTH/VHS domain 30 162 IPR008942 -
Lapu3g00581 568 Gene3D ANTH domain 174 324 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Lapu3g00581 568 MobiDBLite consensus disorder prediction 312 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00581 Lapu-Chr3 5947040 5952662 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00581 K20044 - vum:124839571 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00581 3 5947040 5952662 Lapu3g00581 3 5947040 5952662 ECH
Lapu3g00581 3 5947040 5952662 Lapu9g00472 9 5185974 5197336 PCT