LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu9g00446	ATGAAAAATATTGGATTTCTTGTGGTGGTAGTAGCTACCTTTGTGGTGGCAACCACCGCTGGCAGCTTCTTCCAAGACTTTGAATTAACGTGGGGTGGTGGTCGTGCCAAAATCCTTGAAAATGGACAGCTTCTTACTTTGTCCCTAGACAAGGCCTCTGGCTCTGGCTTTCGTTCCAAAAATGAGTACTTGTTTGGAAAAATTGACATGCAGCTCAAACTGGTGCCTGGAAACTCTGCTGGCACTGTCACAGCATATTATTTATCTTCTCTGGGACCTACTCATGATGAAATAGACTTCGAATTTTTGGGTAACTTGAGTGGTGATCCTTACACTCTTCACACCAATGTATTCAGCCAAGGTAAAGGGAATAGAGAACAACAGTTCCATCTATGGTTCGACCCCACCAAGGACTTCCACACATACTCGGTCCAGTGGAATCCTGCAAGCATCATATTTTCTGTGGATGGAACACCAATAAGGGAGTTCAAGAATTTGGAGACAAAAGGTGTTCCATTTCCAAAGAACCAACCAATGAGAATATACTCTAGTCTATGGGATGCTGAGGATTGGGCCACAAGAGGTGGGCTTGTGAAAACGGACTGGAGCCAGGCTCCATTCATGGCCTCATACAGAAACTTCAATGCAGAAGCTTGTGTTTGGAGTTCTTCAGGTTCTTCTTCTTCATGTTCTTCTTCCTCTGGCCAATCACTGGATGCCACTGGGCAAGCCAAGCTTCGTTTGGTGCAAAAGAATTACATGATTTACAACTACTGCACTGATACCAGACGTTTCCCACAAGGGCTCCCTGCAGAATGTTCCTCTGCATGA	831	0.4501	MKNIGFLVVVVATFVVATTAGSFFQDFELTWGGGRAKILENGQLLTLSLDKASGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGPTHDEIDFEFLGNLSGDPYTLHTNVFSQGKGNREQQFHLWFDPTKDFHTYSVQWNPASIIFSVDGTPIREFKNLETKGVPFPKNQPMRIYSSLWDAEDWATRGGLVKTDWSQAPFMASYRNFNAEACVWSSSGSSSSCSSSSGQSLDATGQAKLRLVQKNYMIYNYCTDTRRFPQGLPAECSSA*	277

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu9g00446	276	FunFam	Xyloglucan endotransglucosylase/hydrolase	9	275	-	-
	Lapu9g00446	276	Gene3D	-	8	276	-	-
	Lapu9g00446	276	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	97	107	IPR008263	GO:0004553\|GO:0005975
	Lapu9g00446	276	Pfam	Glycosyl hydrolases family 16	25	203	IPR000757	GO:0004553\|GO:0005975
	Lapu9g00446	276	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	231	273	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Lapu9g00446	276	CDD	GH16_XET	21	273	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Lapu9g00446	276	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	18	273	IPR044791	GO:0004553
	Lapu9g00446	276	PRINTS	Glycosyl hydrolase family 16 signature	55	73	IPR008264	GO:0004553\|GO:0005975
	Lapu9g00446	276	PRINTS	Glycosyl hydrolase family 16 signature	113	126	IPR008264	GO:0004553\|GO:0005975
	Lapu9g00446	276	PRINTS	Glycosyl hydrolase family 16 signature	131	148	IPR008264	GO:0004553\|GO:0005975
	Lapu9g00446	276	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	17	211	IPR000757	GO:0004553\|GO:0005975
	Lapu9g00446	276	PIRSF	EndGlu_transf	1	276	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Lapu9g00446	276	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	274	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu9g00446	Lapu-Chr9	4799822	4801654	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu9g00446	6	276	Glycoside Hydrolase	AT4G25810	70.714	3.90e-149	417

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu9g00446	K14504		-	gmx:732603	485.337

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu3g00549	3	5582318	5584358	Lapu9g00446	9	4799822	4801654	PCT