LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g00549	ATGGTCCCACACGAAGCTAGCCCTCATCAAAGACAAGTCAACCCTGCTGCACTCTACACGTTTGTACCACTTCTTGGAATGGCAAGTAAGATATTTCTTGCCCTTCTTTTCGTAACCTATGTGGTTGCGGCCTCTGCTGGTAACTTCAACCAAGACTTTGAGATAACATGGGGTGATGGTCGTGCCAAAATCCTCAACAATGGAGAACTTCTCACTTTGTCCCTAGACAAGGCCTCTGGCTCTGGATTTCGTTCTAGGAATGAATACTTGTTTGGAAAAATTGACATGCAGCTAAAGCTCGTGCCTGGTAACTCTGCAGGCACAGTCACAGCTTATTATCTATCTTCTCTTGGGGATGCTCATGATGAAATAGATTTTGAATTTCTGGGTAACTTGAGTGGTGATCCTTATATTCTCCATACAAACTTGTTCACACAAGGGAAAGGTAACAAGGAACAGCAGTTCTATTTGTGGTTCGACCCCACCAAGGACTTCCACACATATTCCATTCTTTGGAATCCTCAGAGCATCATATTCTCTGTGGATGGGACACCCATAAGGGAGTTCAAGAATCTTGAATCAAAAGGGGTTTCTTTTCCCAAAAACCAAGCCATGAGGATATATTCAAGCCTTTGGAATGCTGATGATTGGGCCACGAGGGGAGGCCTAGTGAAGACTGATTGGAGCCAAGCTCCATTCACAGCCTCTTATAGGAGCTTTAATGCTCAAGCATGTGTTTGGACTTCTTCTTCAGGCTCGTCTTGTTCATCCAACAATCCATCATCAAACCAATCATGGATGAAGCAATCAATGGATGCAACAGGGCAAGCCAGAATTAAGTGGGTGCAAAAGAACTACATGATATACAACTACTGCACTGATACTAAGCGTTTCCCACAAGGCCTTCCTCCTGAATGCACAATCGCATGA	930	0.4419	MVPHEASPHQRQVNPAALYTFVPLLGMASKIFLALLFVTYVVAASAGNFNQDFEITWGDGRAKILNNGELLTLSLDKASGSGFRSRNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGDAHDEIDFEFLGNLSGDPYILHTNLFTQGKGNKEQQFYLWFDPTKDFHTYSILWNPQSIIFSVDGTPIREFKNLESKGVSFPKNQAMRIYSSLWNADDWATRGGLVKTDWSQAPFTASYRSFNAQACVWTSSSGSSCSSNNPSSNQSWMKQSMDATGQARIKWVQKNYMIYNYCTDTKRFPQGLPPECTIA*	310

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g00549	309	PRINTS	Glycosyl hydrolase family 16 signature	139	152	IPR008264	GO:0004553\|GO:0005975
	Lapu3g00549	309	PRINTS	Glycosyl hydrolase family 16 signature	157	174	IPR008264	GO:0004553\|GO:0005975
	Lapu3g00549	309	PRINTS	Glycosyl hydrolase family 16 signature	81	99	IPR008264	GO:0004553\|GO:0005975
	Lapu3g00549	309	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	262	306	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Lapu3g00549	309	Pfam	Glycosyl hydrolases family 16	50	229	IPR000757	GO:0004553\|GO:0005975
	Lapu3g00549	309	PIRSF	EndGlu_transf	16	309	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Lapu3g00549	309	CDD	GH16_XET	44	306	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Lapu3g00549	309	FunFam	Xyloglucan endotransglucosylase/hydrolase	36	308	-	-
	Lapu3g00549	309	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	43	306	IPR044791	GO:0004553
	Lapu3g00549	309	Gene3D	-	35	308	-	-
	Lapu3g00549	309	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	123	133	IPR008263	GO:0004553\|GO:0005975
	Lapu3g00549	309	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	43	237	IPR000757	GO:0004553\|GO:0005975
	Lapu3g00549	309	SUPERFAMILY	Concanavalin A-like lectins/glucanases	48	308	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g00549	Lapu-Chr3	5582318	5584358	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g00549	29	309	Glycoside Hydrolase	AT4G25810	71.886	1.95e-154	432

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g00549	K14504		-	gmx:100807063	545.428

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu3g00549	3	5582318	5584358	Lapu9g00446	9	4799822	4801654	PCT