Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00443 ATGGGGAAGGGAGAGTTTCATGGGGGGGTGTTGATGCTGTTGTTTTTGTGGGTTTGTAGTGTCACAGCCTCTGTGACTTATGACCACAAAGCCATTGTGATTGATGGAAAGAGGAGAATTTTAATCTCTGGCTCCATTCACTACCCAAGAAGCACACCTCAAATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCCTTGATGTCATTCAGACCTATGTTTTTTGGAATGGTCATGAACCTTCTCCCGGAAAATACTATTTCGAAGATAGGTATGACTTGGTTAAGTTTGTGAAGCTAGTGCAACAAGCAGGCCTCTATGTTCATCTCCGCATTGGTCCCTACATATGTGCTGAATGGAACTTCGGGGGATTTCCTGTCTGGCTCAAGTATGTTCCTGGAATTGCTTTCAGAACGGACAACGAACCGTTCAAGGCTGCAATGCAAAAATTCACGGCGAAGATTGTTAGCTTGATGAAAGCAGAGGGGTTGTTTCAATCCCAGGGTGGTCCAATAATTATGTCACAGATTGAAAACGAGTATGGTCCTGTGGAATGGGAAATTGGTGCTCCTGGAAAAGCTTATACGAAATGGGCTGCTCAAATGGCTGTTGGTCTAGACACTGGTGTTCCATGGGTTATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTGACACCTGCAATGGGTTCTACTGTGAAAACTTCAAGCCCAATAAGAACACCAAACCCAAAATGTGGACCGAGAATTGGACTGGCTGGTACACTGATTTTGGTGGTGCAGTTCCTGTTAGACCAGCAGAAGACTTGGCATTCTCAGTTGCTAGATTCATACAAAATGGTGGTTCATTCGTTAACTACTATATGTACCATGGAGGAACTAACTTTGGTCGTACATCTGGTGGTCTCTTCATTGCCACTAGCTATGACTATGACGCACCCCTTGATGAATACGGACTTCAAAATGAACCAAAATGGGGGCATTTGAGAAATTTGCATAAAGCAATAAAACAGAGTGAGCCTGCTTTAGTTTCTGCAGATCCTAAAGTGACATCGCTTGGATATAACCTTGAGGCACATGTGTTCTCGACCCCTGGTGCCTGTGCGGCATTCATTGCAAATTATGACACCAAATCCTCTGCAAAAGCTACATTTGGAAGTGGACAATATGATCTACCACCTTGGTCTATCAGTATTCTTCCTGACTGCAAAACTGCTGTGTACAACACCGCAAAGGTTGGTGTCAACAGCTGGCTGAAAAAGATGACTCCTGTAAACGGTGCATTTGCTTGGCAGTCATACAATGAAGAACCTGCATCATCCAGTCAAGATGATTCCATTGCAGCAGAGGCACTTTGGGAACAGGTCAACGTGACCCGGGATTCTTCAGACTATTTGTGGTATATGACAGATGTCTACATTAATGCTAATGAAGGTTTTATAAAGAACGGACAATCTCCTGTTCTCACTGTAATGTCAGCAGGCCATCTGCTACATGTTTTCATTAATGGTCAACTTTCAGGAACTGTGTATGGGGGATTGGGGAATCCTAAATTAACATTTAGTGACAATGTGAACTTGAGGGTTGGCAATAACAAGCTTTCATTACTTAGTGTTGCCGTTGGTCTCCCGAATGTTGGTTTGCACTTTGAAACATGGAATGCTGGGGTGTTAGGCCCAGTCACTCTGAAGGGTCTAAATGAGGGAACACGAGACTTATCCCGGCAGAAATGGTCTTACAAGGTTGGACTGAAAGGTGAAGGCTTGAACCTTCACACTGAAAGTGGGAGTAGCTCTGTTGAATGGACACGAGGATCATTAGTGGCTAAAAAACAACCTTTGACATGGTACAAGGCAACTTTTAGTGCACCAGCTGGCAATGATCCACTGGCTCTAGATATGGGTAGCATGGGAAAGGGTGAAGTATGGATCAACGGTCGCAGCATTGGTCGCCATTGGCCTGGATATATAGCACATGGTAGCTGTAACGCTTGCAACTACGCTGGATTTTATACTGATAAAAAATGCAGGACAAATTGTGGAAAACCATCTCAGAGATGGTATCATGTTCCTCGTTCATGGCTGAACTCAGGTGGTAACTTCTTGGTTGTGTTTGAAGAATGGGGAGGTGATCCTAATGGAATTGCTTTGGTGAAAAGAACCTAA 2169 0.4412 MGKGEFHGGVLMLLFLWVCSVTASVTYDHKAIVIDGKRRILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFVKLVQQAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTAKIVSLMKAEGLFQSQGGPIIMSQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLDTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKNTKPKMWTENWTGWYTDFGGAVPVRPAEDLAFSVARFIQNGGSFVNYYMYHGGTNFGRTSGGLFIATSYDYDAPLDEYGLQNEPKWGHLRNLHKAIKQSEPALVSADPKVTSLGYNLEAHVFSTPGACAAFIANYDTKSSAKATFGSGQYDLPPWSISILPDCKTAVYNTAKVGVNSWLKKMTPVNGAFAWQSYNEEPASSSQDDSIAAEALWEQVNVTRDSSDYLWYMTDVYINANEGFIKNGQSPVLTVMSAGHLLHVFINGQLSGTVYGGLGNPKLTFSDNVNLRVGNNKLSLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSRQKWSYKVGLKGEGLNLHTESGSSSVEWTRGSLVAKKQPLTWYKATFSAPAGNDPLALDMGSMGKGEVWINGRSIGRHWPGYIAHGSCNACNYAGFYTDKKCRTNCGKPSQRWYHVPRSWLNSGGNFLVVFEEWGGDPNGIALVKRT* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00443 722 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Lapu9g00443 722 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Lapu9g00443 722 PRINTS Glycosyl hydrolase family 35 signature 613 627 IPR001944 GO:0004553|GO:0005975
Lapu9g00443 722 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Lapu9g00443 722 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Lapu9g00443 722 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Lapu9g00443 722 PRINTS Glycosyl hydrolase family 35 signature 640 656 IPR001944 GO:0004553|GO:0005975
Lapu9g00443 722 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Lapu9g00443 722 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Lapu9g00443 722 Pfam Beta-sandwich domain in beta galactosidase 344 414 IPR041392 -
Lapu9g00443 722 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Lapu9g00443 722 FunFam Beta-galactosidase 289 416 - -
Lapu9g00443 722 Gene3D - 432 576 - -
Lapu9g00443 722 PANTHER BETA-GALACTOSIDASE RELATED 17 721 IPR001944 GO:0004553|GO:0005975
Lapu9g00443 722 FunFam Beta-galactosidase 586 722 - -
Lapu9g00443 722 SUPERFAMILY (Trans)glycosidases 24 339 IPR017853 -
Lapu9g00443 722 Pfam Glycosyl hydrolases family 35 32 336 IPR031330 -
Lapu9g00443 722 Gene3D Glycosidases 18 342 - -
Lapu9g00443 722 Gene3D - 591 722 - -
Lapu9g00443 722 SUPERFAMILY Galactose-binding domain-like 578 717 IPR008979 -
Lapu9g00443 722 FunFam Beta-galactosidase 20 340 - -
Lapu9g00443 722 FunFam Beta-galactosidase 441 578 - -
Lapu9g00443 722 SUPERFAMILY Galactose-binding domain-like 398 568 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00443 Lapu-Chr9 4746678 4753649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00443 10 721 Glycoside Hydrolase AT3G13750 73.007 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00443 - - gmx:100781959 1429.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00443 9 4746678 4753649 Lapu9g00443 9 4746678 4753649 ECH
Lapu3g00543 3 5529303 5535020 Lapu9g00443 9 4746678 4753649 PCT