Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00543 ATGGAGAATTTACCAAGGGGGATTTTTTATACCCTGCTGCTATTTTTGTGGGTTTGTGCAGTCACAGCCTCTGTGACTTATGATCGCAAAGCGATTCTTATTAATGGGCAGAGAAGAATTTTGATCTCTGGCTCCATCCACTACCCCAGAAGCACACCTGAGATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCTTAGATGTTATTCAAACTTATGTGTTTTGGAATGGACATGAACCTTCTCCTGGAAAGTATTATTTCGAGGATAGATACGACTTGGTTAAGTTCATCAAGGTGGTGCAGCAGGCTGGTCTCTATGTTCATCTCCGTATTGGTCCCTTCGTATGTGCTGAGTGGAACTTTGGGGGGTTTCCTGTTTGGCTCAAGTATGTTCCGGGTATTTCTTTCAGAACAGACAATGAACCTTTCAAGGCGGCAATGCAAAAATTTACTGAGAAGATTGTCAACATGATAAAGGCGGAGAAATTGTTCCAGACTCAGGGAGGTCCAATAATTATGTCACAGATAGAAAACGAATTTGGACCAGTGGAGTGGGAAATTGGTGCTCCTGGAAAAGCTTATGCCCAATGGGCTGCTAAAATGGCTGTGGGTTTAGATACTGGTGTCCCCTGGATTATGTGCAAGCAAGACGATGCTCCGGATCCTGTTATTAACACCTGCAATGGATTCTACTGTGAAAACTTCACTCCTAACACGGAGTACAAACCCAAAATGTGGACAGAGAACTGGAGTAGCTGGTACACCGAGTTTGGTGGTGCGGTCCCTCGTAGACCCGCAGAAGACATGGCCTTCTCAGTTGCAAGATTCGTACAGAATGGTGGTTCATTTGTTAATTACTATATGTTCCATGGAGGAACTAACTTTGATCGGACATCAGGTGGCCCCTTCATTGCCACTAGCTATGACTATGATGGTCTCCTTGATGAATACGGACTTTTAAATGAACCAAAATGGGGGCATTTGAGAGATTTGCATAAAGCAATAAAGCTCTGTGAGCCAGCTTTAGTGTCTGTGGATCCCATAGTGACATGGCCTGGGCAAAACCTTGAGGTACACGTGTTCAAGACTTCTGGTGCTTGTGCTGCATTCCTAGCAAACTATGACACCAACTCTTCCGCAACAGTTACATTTGGAAATGGACAATATGACCTACCACCTTGGTCTATCAGCATCCTTCCGGATTGCAAAACTGAAGTTTTCAACACTGCAAGACTTGGTGCTCAAAGCTCTCTGATGAAGATGACTGCTGTGCACACTGCATTTGATTGGCAGTCGTACAATGAAGAGCCTGCATCGTCCACGGAAGATGATCCCTTGACAGCATATGCACTCTGGGAGCAGATTAATATCACCCGAGATTCTACGGATTACTTGTGGTATATGACAGATGTCAACATTGATGCAAATGAAGGTTTCATAAAGAGTGGACAATCTCCTGTTCTTACTGTGATGTCAGCTGGCCATGCTTTGCATGTTTTCGTTAATGGTCAACTTTCAGGTACTGTGTACGGGGGATTGGAGTTCCCTAAATTAACATTTAGTAACAGTGTTAAGCTGAGGGTTGGCAATAATAAGATATCTTTACTAAGTATTGCCGTGGGTCTCCCGAACGTTGGGGTATGGTTTGAGACATGGAATGCTGGGGTGTTAGGTCCAGTCACACTTACTGGTCTAAATGAGGGGACTAGAGACTTGTCTAAACAGAAATGGTCTTACAAGATTGGTCTCAAGGGAGAGGCCTTAAACCTTAACACTGTAAGTGGAAGTAGTTCAGTTGAATGGGTACAAGGATCATTATTGGCTAAAAAACAACCTTTGACATGGTACAAGACAACTTTTAGCACACCAGTAGGCAATGATCCATTGGCTCTAGACATGATTAGCATGGGAAAGGGCCAAGTATGGATAAATGGTCGAAGCATTGGACGCCATTGGCCTGGGTATATAGCACGCGGTGGTTGCGAGGAATGCCACTACGCCGGAACTTACACTGATAAAAAATGCCAGACAAACTGTGGAGAACCCTCTCAGAGATGGTACCATATTCCTCGGTCGTGGCTGAACCCGAGTGGGAACTATCTGGTTGTGTTTGAAGAATGGGGAGGAGACCCTAATGGAATTTCTTTGGTGAAAAGAACAACAGAAAGTGTTTGTGCTGATATATATGAAGGGCAACCAACTCTTAAAAACAGGCAGATGCTAGACACTGGCAAAATTAATAGGCCCAAGGCTCACTTGTGGTGTCCACCTGGGCTAAAGATCTCCCAGATCAAATTTGCCAGTTACGGATTGCCACAGGGAACTTGTGGAAACTATAGAGAGGGAAGCTGTCATGCTCACAAATCATATGATGCTCCTGAAAAGAACTGCATTGGCAAGCAATCTTGCTTGGTGACTGTAGCTCCTGAAGTTTTTGGGGGAGATCCATGTCCGGGAACTGCAAAGAAGTTGTCACTGGAGGCACTATGCAGCTAG 2502 0.4464 MENLPRGIFYTLLLFLWVCAVTASVTYDRKAILINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFIKVVQQAGLYVHLRIGPFVCAEWNFGGFPVWLKYVPGISFRTDNEPFKAAMQKFTEKIVNMIKAEKLFQTQGGPIIMSQIENEFGPVEWEIGAPGKAYAQWAAKMAVGLDTGVPWIMCKQDDAPDPVINTCNGFYCENFTPNTEYKPKMWTENWSSWYTEFGGAVPRRPAEDMAFSVARFVQNGGSFVNYYMFHGGTNFDRTSGGPFIATSYDYDGLLDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPIVTWPGQNLEVHVFKTSGACAAFLANYDTNSSATVTFGNGQYDLPPWSISILPDCKTEVFNTARLGAQSSLMKMTAVHTAFDWQSYNEEPASSTEDDPLTAYALWEQINITRDSTDYLWYMTDVNIDANEGFIKSGQSPVLTVMSAGHALHVFVNGQLSGTVYGGLEFPKLTFSNSVKLRVGNNKISLLSIAVGLPNVGVWFETWNAGVLGPVTLTGLNEGTRDLSKQKWSYKIGLKGEALNLNTVSGSSSVEWVQGSLLAKKQPLTWYKTTFSTPVGNDPLALDMISMGKGQVWINGRSIGRHWPGYIARGGCEECHYAGTYTDKKCQTNCGEPSQRWYHIPRSWLNPSGNYLVVFEEWGGDPNGISLVKRTTESVCADIYEGQPTLKNRQMLDTGKINRPKAHLWCPPGLKISQIKFASYGLPQGTCGNYREGSCHAHKSYDAPEKNCIGKQSCLVTVAPEVFGGDPCPGTAKKLSLEALCS* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00543 833 Gene3D - 586 727 - -
Lapu3g00543 833 SUPERFAMILY Galactose-binding domain-like 398 568 IPR008979 -
Lapu3g00543 833 Pfam Galactose binding lectin domain 755 832 IPR000922 GO:0030246
Lapu3g00543 833 CDD Gal_Rha_Lectin_BGal 750 832 - -
Lapu3g00543 833 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Lapu3g00543 833 Pfam Beta-sandwich domain in beta galactosidase 349 413 IPR041392 -
Lapu3g00543 833 FunFam Beta-galactosidase 441 578 - -
Lapu3g00543 833 SUPERFAMILY Galactose-binding domain-like 578 737 IPR008979 -
Lapu3g00543 833 ProSiteProfiles SUEL-type lectin domain profile. 747 833 IPR000922 GO:0030246
Lapu3g00543 833 FunFam Beta-galactosidase 289 416 - -
Lapu3g00543 833 Pfam Glycosyl hydrolases family 35 32 336 IPR031330 -
Lapu3g00543 833 Gene3D - 744 833 IPR043159 -
Lapu3g00543 833 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Lapu3g00543 833 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Lapu3g00543 833 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Lapu3g00543 833 PRINTS Glycosyl hydrolase family 35 signature 613 627 IPR001944 GO:0004553|GO:0005975
Lapu3g00543 833 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Lapu3g00543 833 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Lapu3g00543 833 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Lapu3g00543 833 PRINTS Glycosyl hydrolase family 35 signature 640 656 IPR001944 GO:0004553|GO:0005975
Lapu3g00543 833 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Lapu3g00543 833 Gene3D Glycosidases 18 340 - -
Lapu3g00543 833 SUPERFAMILY (Trans)glycosidases 24 341 IPR017853 -
Lapu3g00543 833 PANTHER BETA-GALACTOSIDASE RELATED 19 737 IPR001944 GO:0004553|GO:0005975
Lapu3g00543 833 FunFam Beta-galactosidase 744 833 - -
Lapu3g00543 833 FunFam Beta-galactosidase 586 727 - -
Lapu3g00543 833 FunFam Beta-galactosidase 20 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00543 Lapu-Chr3 5529303 5535020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00543 12 833 Glycoside Hydrolase AT3G13750 71.256 0.0 1252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00543 - - gmx:106795462 1608.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00543 3 5529303 5535020 Lapu3g00543 3 5529303 5535020 ECH
Lapu3g00543 3 5529303 5535020 Lapu9g00443 9 4746678 4753649 PCT