Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00436 ATGGAGACGAGTAATTTAGCACTTTCCATAGCCATGGTTGTTCTATGTTTATCTAGAATAGTGTTCACACAAGCAAAAATTCAAGTCCCCAGAGAAATAGCCTCAAAGTTCAGTCGTGACCCTCAGATCCTTTCACTAGCATCAACAGATTATGGCCACATGGTTCACCAAACCCCATTAGAAGTTTTTGAGCCATCTTCGGTTAGTGACATCTCAAGTTTGATAAATTTCTCAAACTCTCTTCCCACCCCATTCACCATAGCCACCAGAGGCAAAGCTCACTCCATTCTTGGCCAAGCCCAGACACGAAATGGGGTGGTGTTGAACATGACTAATCTCAATGGGTCTACGATTCTGGTTCCAAATTGTGATGGGAAGAATCCATTGAATTCATGTTATGCTGATGTTGGTGGTGAAGTATTGTGGATTGATGTGTTGCATGCAACCCTTGAACGTGGACTCACACCTCTATCTTGGACTGATTATTTGTTTTTGACTGTCGGAGGAACTCTGTCTAATGCTGGAATCAGTGGCCAAACCTTTCGATTCGGTCCTCAGATCTCTAATGTTCTTGAATTGGATGTTGTCACAGGGAAAGGAGACCTTGTGAGTTGCTCTAGGGAGAAGGAGTCAGAGTTATTTTATGGTGTTCTTGGAGGATTAGGTCAATTTGGGGTGATAACAAGAGCAAGAATACCTCTAGGACCTGCACCTACTAGGGCAAAATGGCTCCATCTGCTTTACAATAACTTCACTGCATTTTCTAGAGACCAAGAACATTTAATCTGCTCTAGTGGAAATAATGACACAATTGCAGCAGATTATGTAGAAGGCATGCTTCTCTTGAATCAGCCACCCCTGGATCTTTCCTTTTATCCAGATTCTGATCATCAAAGGATAATATCACTGGTAACTCAAAATGGCATAATCTACATCATAGAGCTTGTCAAATACTATGACAACAACTCTCAAGATTTCGTGGACAAGGATGTGGCAGATTTGGTGAAAGGGTTAAACTTCGTACCAACATTTATCTTCGAAAAATATGCATCGTACGAGGAGTTTCTGAATAGAGTCTACGCAGACGAGGTATTTCTAAGGTCAAAAGGACTTTGGGAAGTTCCTCATCCTTGGTTGAACATTTGGATTCCAAGATCTCGAATATCAGATTTTAACGAAGGTGTCTTCAAGAACATTATTCTTAAGCAAAACATTTCCAGCGGAATTTCTTTGATATACCCAGTGAACCGAAACAAGTGGGACGATAAGATGTCACCAGTTACACCAGAGGAAGATGTTTTCTACGCTGCAAGTCTTTTGCGTTCTGCAAGTTCGATGGATTTGGTGGAGAAATTTCAGACTCAAAACCAACAAATATTACAGTTTTGTAACGATGCTGGTATTAAGATCAAGGAATATCTCATTGGGAACAAAACACAACAACAATGGGTGGAGCACTTTGGCTCAAAATGGAAACTTTTTGCAGATAGAAAATCTCAATTTGATCCCAAAAGAATATTGTCACCAGGGCAAGGGATTTTCCAATGA 1548 0.407 METSNLALSIAMVVLCLSRIVFTQAKIQVPREIASKFSRDPQILSLASTDYGHMVHQTPLEVFEPSSVSDISSLINFSNSLPTPFTIATRGKAHSILGQAQTRNGVVLNMTNLNGSTILVPNCDGKNPLNSCYADVGGEVLWIDVLHATLERGLTPLSWTDYLFLTVGGTLSNAGISGQTFRFGPQISNVLELDVVTGKGDLVSCSREKESELFYGVLGGLGQFGVITRARIPLGPAPTRAKWLHLLYNNFTAFSRDQEHLICSSGNNDTIAADYVEGMLLLNQPPLDLSFYPDSDHQRIISLVTQNGIIYIIELVKYYDNNSQDFVDKDVADLVKGLNFVPTFIFEKYASYEEFLNRVYADEVFLRSKGLWEVPHPWLNIWIPRSRISDFNEGVFKNIILKQNISSGISLIYPVNRNKWDDKMSPVTPEEDVFYAASLLRSASSMDLVEKFQTQNQQILQFCNDAGIKIKEYLIGNKTQQQWVEHFGSKWKLFADRKSQFDPKRILSPGQGIFQ* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00436 515 Pfam FAD binding domain 60 206 IPR006094 GO:0050660
Lapu9g00436 515 Gene3D - 240 473 IPR016170 -
Lapu9g00436 515 Gene3D - 110 239 IPR016169 -
Lapu9g00436 515 SUPERFAMILY FAD-linked oxidases, C-terminal domain 238 514 IPR016164 GO:0003824|GO:0050660
Lapu9g00436 515 ProSiteProfiles PCMH-type FAD-binding domain profile. 55 237 IPR016166 GO:0071949
Lapu9g00436 515 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 238 514 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lapu9g00436 515 PANTHER GULONOLACTONE OXIDASE 29 515 - -
Lapu9g00436 515 SUPERFAMILY FAD-binding/transporter-associated domain-like 37 236 IPR036318 GO:0050660
Lapu9g00436 515 Gene3D - 41 514 IPR016167 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00436 Lapu-Chr9 4666060 4670908 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00436 K00279 - gmx:100793158 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00436 9 4666060 4670908 Lapu9g00436 9 4666060 4670908 ECH
Lapu3g00535 3 5469099 5473388 Lapu9g00436 9 4666060 4670908 PCT