Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00535 ATGGAATGTTATTTTAGATTTTCCAAAGCTTTGGTTATGTTAGGGTTAACCTTCATAGTGCTCACACAGGCACAATCACAAACTTGGTCATTACTCCAAGCACCAAAAGACCTAACCCTGAAGCTCATTCGTGATCCTGTGACCCTTTCACTGGCCTCAACCGACTTTGGCCACATAGTTCATGACAACCCTTTTGCAATTTTTTCCCCATCGTCCATTAGTGACATCTCTCTGCTGATAAATTTCTCGAATTCTCTCCCCATCCCTTTCACCATAGCTCCTAGAGGGCAAGCACATTCGGTTAATGGACAAGCCATGACAAATGACGGGGTTGTGGTGAACATGACTGAGTTGAATGGGTTTAGAAACGGGGCTGGGATTGTAGTAGTGTCTGATGGCTCAACAAGTGCTCCATATGCTGATGTGGGTGGAGAACAGATTTGGATTGATGTGTTGCATGCAACACTTGAGCGTGGACTCACACCACTCTCTTGGACTGACTACTTGTTCTTATCGGTTGGTGGAACTCTCTCCAATGCTGGGATCAGTGGCCAATCCTTCAGGTTTGGTCCTCAGATTTCCAATGTTCATGAATTGGATGTTGTTACAGGGAAAGGAGACTTAGTGACATGTTCTTCGAAGAACAATTCAGAGTTGTTTTACGCCGTTCTAGGAGGATTAGGTCAATTTGGAATTATAACCAGGGCAAGAATAGCTCTTGGACCCGCACCAACTAGGGCGAAGTGGCTCCGTTTGCTTTACAGCGATTTCTCTGCATTTTCTGCAGACCAAGAACACTTGATCTCGTTGAATGGAAGAAACGAGACTATTGCTGCTGATTATGTAGAAGGTTTCCTTCTGCTAAATCAGCCACCACTGGATCTTTCCTCTTTTCCAGCACCTGATCAACCTCGTATAACTTCCCTTGTAACACAATACGGCATCATCTATATCATAGAGCTTGTGAAATATTACGACAATAGTACTCAAGAACATGTTGACGAGGATGTGAAACATTTGGTGGAGGGGTTGAAGTTTGTTCCTACTTTTATGTTCGAAAAAGATGTATCATACGAAGAGTTCCTTAACAGAGTTCATCCTGACGAGCTTTTCCTAAGATCAGAAGGGCTTTGGGATGTCCCTCATCCTTGGATAAACCTCTTTGTTCCAGGATCTCGAATCTCTGATTTCAACGAAGGTGTGTTCAAGGGCATTATTCTAAAGCAAAATATCACTGCAGGAATTGTGATAATCTACCCCATGAATCGATCCAAGTGGAATGATAAGATGTCTGCAGTTACACCTAATGAAGATGTTTTCTATGCTGTGTCACTTCTTCATGCAACTGGGTTTGATAAAGTGGAGGAATTTCAAGCTCAAAACCAACAAATATTGGAGTTCTGTGAGGATGCTGGAATTGAGATCAAGCAATATCTTCCCCAAATCAAAAGAAGAAAAGAATGGATGAAACAGTTTGGCTCCAAATGGGAAATTTTCGAAGAAAGAAAAACTCAATTTGATCCCAACAGAATACTGTCACCTGGACAGAGGATTTTCAATTCAATATAA 1569 0.4207 MECYFRFSKALVMLGLTFIVLTQAQSQTWSLLQAPKDLTLKLIRDPVTLSLASTDFGHIVHDNPFAIFSPSSISDISLLINFSNSLPIPFTIAPRGQAHSVNGQAMTNDGVVVNMTELNGFRNGAGIVVVSDGSTSAPYADVGGEQIWIDVLHATLERGLTPLSWTDYLFLSVGGTLSNAGISGQSFRFGPQISNVHELDVVTGKGDLVTCSSKNNSELFYAVLGGLGQFGIITRARIALGPAPTRAKWLRLLYSDFSAFSADQEHLISLNGRNETIAADYVEGFLLLNQPPLDLSSFPAPDQPRITSLVTQYGIIYIIELVKYYDNSTQEHVDEDVKHLVEGLKFVPTFMFEKDVSYEEFLNRVHPDELFLRSEGLWDVPHPWINLFVPGSRISDFNEGVFKGIILKQNITAGIVIIYPMNRSKWNDKMSAVTPNEDVFYAVSLLHATGFDKVEEFQAQNQQILEFCEDAGIEIKQYLPQIKRRKEWMKQFGSKWEIFEERKTQFDPNRILSPGQRIFNSI* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00535 522 Gene3D - 246 478 IPR016170 -
Lapu3g00535 522 Gene3D - 115 245 IPR016169 -
Lapu3g00535 522 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 244 519 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lapu3g00535 522 SUPERFAMILY FAD-linked oxidases, C-terminal domain 244 520 IPR016164 GO:0003824|GO:0050660
Lapu3g00535 522 SUPERFAMILY FAD-binding/transporter-associated domain-like 42 242 IPR036318 GO:0050660
Lapu3g00535 522 Gene3D - 46 519 IPR016167 -
Lapu3g00535 522 ProSiteProfiles PCMH-type FAD-binding domain profile. 60 243 IPR016166 GO:0071949
Lapu3g00535 522 PANTHER GULONOLACTONE OXIDASE 37 520 - -
Lapu3g00535 522 Pfam FAD binding domain 66 212 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00535 Lapu-Chr3 5469099 5473388 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00535 K00279 - gmx:100808553 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00535 3 5469099 5473388 Lapu9g00436 9 4666060 4670908 PCT