Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00432 ATGGCGTGGCTGCTTCGCACCGCTAACACTTCCCTCCTTAAACGGTCTTTCTTCCATTCCGACCTTCTAACGCGCTTTTGCTTCAAACCAGGACTGTTGGGCACGTCTCAAGTTTTGAGCTTTTCAACTCGTAAAAGGAGGTCTAAATCAGATGGAAGTGACTCAGGGGAAGAGAACATGTGCAAGAAAGATGTGGCCCTACAACAAGCTATTGATCAGATCACTTCTGCATATGGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTGGCACCTAAAAATATTCCTGTGGTGTCTACTGGTTCTTTTGCTCTGGATATAGCACTTGGGGTTGGAGGTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCAGGGAAAACAACTCTTGCTTTGCATGTGATTGCAGAAGCACAAAAGCTAGGAGGCTACTGTGCCTTTGTTGATGCCGAGCATGCACTTGATAAGACACTTGCAGAGTCAATTGGTGTAAATACTAAAAACTTGCTTCTCTCACAACCTGATTGTGGTGAACAAGCACTTGGCCTTGTGGATACCTTAATCCGGAGTGGTTCGGTTGATGTAGTTGTTGTTGACAGTGTGGCTGCTCTTGTTCCGAAAGGTGAGCTTGATGGAGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCTCTTCGGAAATTGTGCCACTCATTGTCTCTTTCCCAGTGTATATTGGTTTTTATAAACCAGGTGAGGTCAAAGATTTCTACTTTTGGAGGATTTGGTGGTCCCACTGAAGTTACTTGTGGTGGTAATGCACTGAAGTTCTATGCTTCTGTGCGGCTAAATATCAAAAGAATTGGGTTTGTCAAGAAAGGTGAAGAGACTTTAGGAAGCCAAGTTCTTGTCAAGGTTGTAAAGAACAAGCATGCCCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTTGGAAAGGGTATAAGTAGAGAAGCAGAGGTTATAGAGTTGAGCATAAAATACAAACTCATAAAGAAGAGTGGTTCATTTTATGAATATAATGGCCAGAATTTCCATGGCAAGGATGCTCTAAAGAGGTTCCTGGTGGCCAGTGATGCTTTGCAAGAATTAGCAACAAAACTCAGGGAGAAGATTCTTGTTGTGGAGCCGGAACTGGACCCAGAGGAGCAGGCGATGATTGGAGATGTTATGGAACAAATGGAAGAACTGGTATCGCTTGATTCCACTGATGAAACTGCTTCTGCTGCTGCTGCAGTTGAAGCATAA 1290 0.4442 MAWLLRTANTSLLKRSFFHSDLLTRFCFKPGLLGTSQVLSFSTRKRRSKSDGSDSGEENMCKKDVALQQAIDQITSAYGKGSIMWLGRSVAPKNIPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALGLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILVFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETLGSQVLVKVVKNKHAPPFKTAQFELEFGKGISREAEVIELSIKYKLIKKSGSFYEYNGQNFHGKDALKRFLVASDALQELATKLREKILVVEPELDPEEQAMIGDVMEQMEELVSLDSTDETASAAAAVEA* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00432 429 ProSiteProfiles RecA family profile 1. 94 253 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lapu9g00432 429 CDD RecA 94 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu9g00432 429 SMART AAA_5 116 290 IPR003593 GO:0016887
Lapu9g00432 429 ProSiteProfiles RecA family profile 2. 263 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lapu9g00432 429 ProSitePatterns recA signature. 275 283 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lapu9g00432 429 FunFam Recombinase RecA 92 390 - -
Lapu9g00432 429 Gene3D - 93 388 IPR027417 -
Lapu9g00432 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 329 IPR027417 -
Lapu9g00432 429 SUPERFAMILY RecA protein, C-terminal domain 330 384 IPR023400 -
Lapu9g00432 429 NCBIfam recombinase RecA 63 382 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu9g00432 429 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu9g00432 429 PRINTS RecA protein signature 152 181 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu9g00432 429 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu9g00432 429 PRINTS RecA protein signature 272 300 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu9g00432 429 PRINTS RecA protein signature 186 215 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu9g00432 429 Hamap Protein RecA [recA]. 63 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu9g00432 429 Pfam recA bacterial DNA recombination protein 66 330 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu9g00432 429 PANTHER RECA 43 394 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00432 Lapu-Chr9 4574723 4580567 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00432 K03553 - gmx:100798983 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00432 9 4574723 4580567 Lapu9g00432 9 4574723 4580567 ECH
Lapu3g00528 3 5389720 5397709 Lapu9g00432 9 4574723 4580567 PCT