Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00528 ATGGCGAGGCTGCTTCGTAACACTTCCCTTCTCACGCGCTCGCTATTCGTCCCTAAGGGCTTTGAGCTGGGATTATTTGGCTCTTCTCGGATTTTGAGCTTTTCATCTAAAGGTAGAAGGCGCTCCAAATCTGATGGAAGTGACTCTGGTGAAGAAAACGTGTCTAAGAAAGAGTTGGCCCTTCAACAAGCTCTTGATCAGATAACTTCTGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGTTCTGTCTCACCAAAAAACGTACCTGTTGTGTCTACAGGTTCTTTTGCTCTTGATATAGCATTAGGAATTGGTGGTCTTCCGAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAAGCGCAGAAGCAAGGAGGTTATTGTGTCTTTGTTGATGCTGAGCATGCCCTTGATAAGGCACTTGCGGAATCTATTGGTGTGAATACAGAAAACTTGCTTCTATCCCAACCTGATTGTGGTGAACAAGCTCTTAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCACTTGTTCCCAAAGGCGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGAAAATTGAGCCATGCCTTGTCACTTTCTCAAAGTATATTAATTTTTATAAATCAGGTGAGGTCAAAGATTTCAACTTTTGGGGGATTTAGTGGGCCTACGGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCTGTGCGTCTAAATATCAAGAGAACAGGGTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCGTTTAAAACTGCTGAGTTTGAGCTTGAATTTGGCAAGGGGATATGTAAAGAAACCGAGATTATAGATTTAAGTGTAAAACACAAACTCATCTTAAAGGCTGGTGCAATGTATTACTATAACGAACAGAACTTCCGCGGTAAAGATGCCCTGAAGAGTTTCCTAGCTGAGAATTGTAGCGCATTAGAAGAACTTGAAGCGAAGCTCAGAGAGAAGGTTCTTAATGTTGAGACAGAACAGACACAGGAATCAAATGTTATTAATGGAGATGTTACAGAAGAAATTGCAACAGTTAATTCTACTGTCGAAGAAACAGCTGTTGTAGAAGCATGA 1257 0.424 MARLLRNTSLLTRSLFVPKGFELGLFGSSRILSFSSKGRRRSKSDGSDSGEENVSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKALAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQSILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRTGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELEFGKGICKETEIIDLSVKHKLILKAGAMYYYNEQNFRGKDALKSFLAENCSALEELEAKLREKVLNVETEQTQESNVINGDVTEEIATVNSTVEETAVVEA* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00528 418 FunFam Recombinase RecA 86 386 - -
Lapu3g00528 418 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu3g00528 418 PRINTS RecA protein signature 352 369 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu3g00528 418 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu3g00528 418 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu3g00528 418 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu3g00528 418 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu3g00528 418 SUPERFAMILY RecA protein, C-terminal domain 325 380 IPR023400 -
Lapu3g00528 418 Pfam recA bacterial DNA recombination protein 60 323 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu3g00528 418 ProSiteProfiles RecA family profile 2. 255 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lapu3g00528 418 Coils Coil 367 390 - -
Lapu3g00528 418 Gene3D - 87 389 IPR027417 -
Lapu3g00528 418 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lapu3g00528 418 CDD RecA 88 325 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu3g00528 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 323 IPR027417 -
Lapu3g00528 418 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu3g00528 418 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lapu3g00528 418 PANTHER RECA 34 393 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu3g00528 418 NCBIfam recombinase RecA 57 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lapu3g00528 418 SMART AAA_5 110 284 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00528 Lapu-Chr3 5389720 5397709 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00528 K03553 - gmx:100781271 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00528 3 5389720 5397709 Lapu3g00528 3 5389720 5397709 ECH
Lapu3g00528 3 5389720 5397709 Lapu9g00432 9 4574723 4580567 PCT