Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00408 ATGATGTTGTCGAGAATGGAGGCTGGGAAGAAGAGTGGTGGGGGCTCTAGTACCACCCCGAAGAAGTTGTTAAAGGATGTTGAAACCATTAACAAAGCTTTGTACTTGGATAGAGGGTCTTCGAGGAGTTCAATACCTAGTGTAAATTCTCGATCTAAATTCGCTGGGAAATCTCAGTTACCTGATCCAAAATCTAAGTCTAAAGCCGGTGGTAATAATAATAATAGTAATAATGATGATAGTGTTCAGAAGGATAAGAAGTCCATTTGGAATTGGAGGCCTCTGAGGGCCCTTTCCCACATCCGAAATAAGAGGTTCAATTGTAGTTTTTATCTGCAAGTTCACTTGATTGAAGGGTTGCCTCCAAGTTTTGATAATGCTAGCCTTGCTGTGTACTGGAAAAGGCGTGATGGGGTTCTTGTGACCGGTCCTGCCAAGGTGGTTCAGTCTGTGGCTGAATTTGAAGAGAAGTTGACCTACACTTGCTCGGTGTATGGCAGTAGGAGTGGACCTCACCATTCTGCGAAGTACGAAGCAAAGCATTTTTTGCTTTATGCTTCACTTCTCAGTGCGCAGGAGATGGATTTGGGAAAGCACCGGGTGGATCTGACAAGGTTGCTTCCTCTCACTCTGGAGGAGCTTGAGGAGGAGAAGAGCTCAGGGAAGTGGACTACTAGTTTTCGGTTATCGGGAGTGGCTAAGGGTTCTGTGATGAATGTCAGTTTTGGCTATACAGTGGTTGGTGATAATGCTAGTACTACCAGAGACAGCCATAATGCTTCTAACATATTGACTTCCAGGCAGAATACTATTGCTCTGATGAAGCAAGATGTTAAACCCAAACAGTTTGATGGAGGCAGCAGGATGAGGCGTACCACGAGTTCGCAATTCTCACCACGAGCTTCAGATGAGGTAAAGGATCTTCATGAGGTGTTGCCATTAACTAAGTCTGCACTAGCCAGCTCAATAGACATCTTATATAAGAAATTTGATGAAGAAAAGGCTAGTTCTCTGCATGGTGAAGCAGAACTTGATTCTTTCACAGAAAATCTTGGGTCAATCAAGCCAGATGCCTATGCTTCTGATCTTGGAAAAGAAACATTTGACGAGCATGTGAGTAAGGCTGAAGATACATGTCCAGTGCTTGACAAACCTGAACTCTCAGTGTTTCAAGAAAAGCTGGAGATAGTTGAACCAGATGGCTATCTTTTACCTGATTCCGCGAATGAAAACCCTGAACAGTTTCAAGGTAATGATTTTTTTGTTGTTGATAAGGGCATAGAACTGTCTTCAAATGAACCTGTTATAACAGAGGAATTCGTTGTGAAGGCTCCTGAGGATGCATTTACAGTTGATCCTGCCTATACCCTTGGTATATCAGATATACAAGAACCTTTTGAAGACAGTGTTAAACATGATTTCCTGGATGAGGTAAATGGTAGTTCTAAGAACCAGGTAGTGGTAGAGGAATTTGCCAGCAAAGAGGATGGCTTTGACAGTGATACTAATGAGCTGCTCCTGCTAGAGCTAGAATCTGCTTTAAATAGTGTTTCAAATTTGGAGAGAGTGGCACTAGAATCTCCCAATACAGAAGTTAAATCTGGACATAAGATGGTAAAGTCACATAGCTTGGATGATGTTACAGAATCAGTTGCCAGTGAATTTTTAAGCATGTTAGACTTTGACCGTAGTCCAATGGCCTTGAGTTCTGAAAGTGAGCCTGAGTCTCCAAGAGAGCTACTTTTAAGACAATTTGAGAAGGAAGCTTTGGATGGGGGCTTCTCGTCTTTGTTTGATTTTGAATTGAACCATGAAAATGAAGCAGATGGTGGCTATGATGGTTCGGCTGCAACTGAGCAGTGTAACTTTTCTGAAGATGTTAAGTCATCATCCTTTTTGCAAGAGCTGCAGGAGGAGCATCTAGCTGAGTCTCAGGATGTGAGGAGCAAACAGAGGGCTCAGATACTGGAAGACTTGGAAACAGAAGCCTTGATGCGACAATGGGGTTTGAATGAGGAGGTTTTTCATTGTTCTCCGCCAAAAGATTTTACTGGTTTTGGAAGTCCAATTCCTTTGCCACCTGAAGAGCCTCCTATATTGCCTCCTCTTGATGATGGGTTGGGCCCTTTTCTACAAACAAAAGACGGGGGTTTTCTACGCTCTATGAATCCTTCACTTTTCAAGAATTCTAAAAGTGGTGGGAGTTTAATCATGCAGGTATCCAACCCTGTTGTGGTACCTGCAGAAATGGGTTCTGGGATAATGGAGGTTTTGCAGTGTTTGGCTTCAGTGGGAATTGAAAAGCTCTCAATGCAGGCAAAGGAGTTAATGCCGCTAGAAGATATCACAGGGAAGACAATGCAACAAGTAGCATGGGAAGCTATGCCTGTCTTAGAAGGAGCAGAGAGGCAAAGCCATTTGCAGCACGATCCAATAACAAGGCAAGACAATGCTCATGTACGAAGGGACTTGAAAGGAATGCCGTCTGGACAAAAGTCTGGCAAGTTTAGTTCAAGAACAGTGGCCAACCAACCAGGCCCAGAGTTTGTTTCAGTCGAAGACCTTGCTCCATTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGTTTGAGAATCCAATCTGGGATGTCAGAAGAGGAGGCACCCTCAAACATCATTGCACAGTCCATTGGGGATATTTCGGCTCTGCAGGGCAAGGGTGTTGATATTAGTGGGTCCCTTGGCCTGGATGGTGCTGCTGGTTTGCAGTTGATGGATGTAAAAGACGGCAGTGATGGTGGTGATGGTGTTGATGGAATAATGAGCCTATCATTAACTCTGGATGAGTGGATGAGGCTGGATTCCGGGGAGATTGATGATATAGATAATATCAGTGAGCATACTTCCAAACTTCTTGCAGCCCATCATGCCAACTCTTTTGACTTCATTCGTGGGAGTTCAAAGGGAGAGAAGAGACGAGGCAAAAGCAAAAGATGTGGTTTGCTAGGAAACAATTTCACAGTAGCATTAATGGTGCAACTCCGTGACCCTCTGAGAAATTATGAGCCGGTTGGAACACCAATGCTTGCTCTTATACAAGTTGAAAGAGAGTTCATGCTTCCAAAGCAAAAAATTTACAATAGTGTGTCTTTGATAATGAAAAACAATGACGAGGATGATAATAAGGAAATCCAAGCAAAGGTGGAGATGAAGGACACTAAGAAAGAGGAGAAAAGTTCCGAAGAGGAAGAGGCCATTCCTCAGTTCAGAATTACAGAAGTCCATGTGGCCGGTCTGAAGCCCGAGCCTCAGAAAAAGAAGCTTTGGGGAACTTCAAGCCAGCAACAATCTGGTTCTCGCTGGTTGCTTGCTAATGGAATGGGGAAGAGCAATAATAAGCTTTCATTGATGAAGTCAAAGGCTGCGTCTAAATCTAATGCTCCTGTTACCACAAAGGTGCAACCTGGTGACACCTTGTGGAGCATATCATCTCGTGTTTTTGGCAATCGAGGGAAATGGAAGGAGTTGGCAGCACTAAATCCACATATAAGAAACCCCAATGTCATTATACCAAATGACACTATAAGACTCAGCTGA 3579 0.4353 MMLSRMEAGKKSGGGSSTTPKKLLKDVETINKALYLDRGSSRSSIPSVNSRSKFAGKSQLPDPKSKSKAGGNNNNSNNDDSVQKDKKSIWNWRPLRALSHIRNKRFNCSFYLQVHLIEGLPPSFDNASLAVYWKRRDGVLVTGPAKVVQSVAEFEEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAQEMDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGVAKGSVMNVSFGYTVVGDNASTTRDSHNASNILTSRQNTIALMKQDVKPKQFDGGSRMRRTTSSQFSPRASDEVKDLHEVLPLTKSALASSIDILYKKFDEEKASSLHGEAELDSFTENLGSIKPDAYASDLGKETFDEHVSKAEDTCPVLDKPELSVFQEKLEIVEPDGYLLPDSANENPEQFQGNDFFVVDKGIELSSNEPVITEEFVVKAPEDAFTVDPAYTLGISDIQEPFEDSVKHDFLDEVNGSSKNQVVVEEFASKEDGFDSDTNELLLLELESALNSVSNLERVALESPNTEVKSGHKMVKSHSLDDVTESVASEFLSMLDFDRSPMALSSESEPESPRELLLRQFEKEALDGGFSSLFDFELNHENEADGGYDGSAATEQCNFSEDVKSSSFLQELQEEHLAESQDVRSKQRAQILEDLETEALMRQWGLNEEVFHCSPPKDFTGFGSPIPLPPEEPPILPPLDDGLGPFLQTKDGGFLRSMNPSLFKNSKSGGSLIMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDITGKTMQQVAWEAMPVLEGAERQSHLQHDPITRQDNAHVRRDLKGMPSGQKSGKFSSRTVANQPGPEFVSVEDLAPLAMDKIEALSMEGLRIQSGMSEEEAPSNIIAQSIGDISALQGKGVDISGSLGLDGAAGLQLMDVKDGSDGGDGVDGIMSLSLTLDEWMRLDSGEIDDIDNISEHTSKLLAAHHANSFDFIRGSSKGEKRRGKSKRCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFMLPKQKIYNSVSLIMKNNDEDDNKEIQAKVEMKDTKKEEKSSEEEEAIPQFRITEVHVAGLKPEPQKKKLWGTSSQQQSGSRWLLANGMGKSNNKLSLMKSKAASKSNAPVTTKVQPGDTLWSISSRVFGNRGKWKELAALNPHIRNPNVIIPNDTIRLS* 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00408 1192 ProSiteProfiles C2 NT-type domain profile. 98 246 IPR019448 -
Lapu9g00408 1192 ProSiteProfiles LysM domain profile. 1143 1191 IPR018392 -
Lapu9g00408 1192 Gene3D LysM domain 1133 1192 IPR036779 -
Lapu9g00408 1192 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1186 IPR039614 -
Lapu9g00408 1192 MobiDBLite consensus disorder prediction 65 79 - -
Lapu9g00408 1192 SUPERFAMILY LysM domain 1143 1191 IPR036779 -
Lapu9g00408 1192 Coils Coil 633 653 - -
Lapu9g00408 1192 MobiDBLite consensus disorder prediction 281 302 - -
Lapu9g00408 1192 MobiDBLite consensus disorder prediction 39 56 - -
Lapu9g00408 1192 MobiDBLite consensus disorder prediction 1 24 - -
Lapu9g00408 1192 MobiDBLite consensus disorder prediction 39 85 - -
Lapu9g00408 1192 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 103 248 IPR019448 -
Lapu9g00408 1192 CDD LysM 1146 1191 IPR018392 -
Lapu9g00408 1192 MobiDBLite consensus disorder prediction 287 301 - -
Lapu9g00408 1192 SMART LysM_2 1144 1192 IPR018392 -
Lapu9g00408 1192 Pfam LysM domain 1146 1191 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00408 Lapu-Chr9 4318039 4322636 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00408 - - gmx:100815106 1720.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00408 9 4318039 4322636 Lapu9g00408 9 4318039 4322636 ECH
Lapu3g00507 3 5172511 5176017 Lapu9g00408 9 4318039 4322636 PCT