Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00393 ATGGCTGGGATGTCAAAGGAGGAAGTGGCTGGTTCTCCTAGATGGGGTGGTTCAATTATTATGCAGACAACAGAGGATGTGGCTAGAGCTGTTGCTGCTGCTGTGAATTCTCCGAGGCCATCTGTTATATATTCATCAAAAAATGATCATGGTGGCAATCAACTTCAAAGGCTGCAATATCAGGTTACAAAAATGCTAAAAGGATTTTCTCGCCCTCCTGAAGTTAAATATACTAACTACAATCCGGAAATCCTGACAACTCAGAAGCGTCAATGGGCTGCAAACTTTCAATTACAATACATGGACCACAGGTCATGGAAGGAGCCGACAAAGCTGTTTGAAAGCATGGTGGTTGTTGGACTTCATCCTAATTGTGATATTCAGGCACTGCAAAGGCAATATTTCTTAAGAAAGTCTGAAGGCCCTGGTAAATTAAGAAATGCTCTTGGTTATCAGAATCAATCCCGTGTGGAACCCTGTCTAGAACCTCAGGTCTTATTTGTTTACCCTCCAGAAAAAAAGCTGCCTCTTAAAGACAAGGATCTTCTCTCTTTCTGCTTCCCTGGAGGCTTGGAGGTTAATGCTGTTGAGAGAACGCCTTCCATGAGTGAATTGAATGAAATTCTTTTTGGGCAGGAACACCTTAAACAAAGGGATCTGTCTTTTGTATTTAGACTACAGGGTGCCGATAGTTCAACTCTTTATGGGTGCTGTGTCTTAGTTGAAGAGTTAGTGCAAAACCCCTCTGGATTGCTCTCCCTGATTTCTGATAAGCAGTCAAGTTATTCTTCTTTGAAACGCGAGCGCCATATATTAACCACACAAAGATGTTACTGTATTCTCTCAAGGCTCCCATTCTTTGAATTGCACTTTGGTGTCTTGAACAGCATCTTCATGCAAGAACGGCTAGATCGGTTGACGAAGAACATTGGAGATTTAAATTTAGAATATGTTGAAGGTAGCATGGAGGAAGAAACTTTGGGGGAAGATTCAGAGTGCATGTTGGTGAATGATAGATTAGATGATAGACATGATGACAGTCCAACGATTTCTCCATCAAGCCTAAGAAATTCCTCACCCAAAAACATTGAGGATGATAGTCATTATCCCAAGAAACAAATAGTTAACAGGGAGCTTCATACATTTAATGACAGAGTCAATGATAATAATGCCGTGCCTTGTGATTCTGAAAATGATAGAAATATTGTCAAAGATGAATCTGGCCCTACACATGCCGATGATAATGATTTGTATGGAGATGCGTTTGTAACAAATAAACAGTCAGAAGATAGGCGTTTACCCAATGCTATTCTACCACTCTTGCGCAATTGCCAGTATGAAAGCTCTGAATCTTCCTGCAGTTTTCAGGGTTCTCCTTGTGATGACAGAAATTTCAGGAGTGATGCTGATGATACTGAGACAGAAGATGCTTCATTCTCTGGCCAAGAGGATTTAAATGACCTAAATGGTATTCTTGAATGGGCTAAGGCAAATAACTGTGTACCACTACAGATTATAAGTGAGTATTATTGCTTAAGTTGCCCTGCAAGGGGCTCATCACTTAGGTTTCATCCTTTGGAGCACCTGCATCCCTTAGAATATCACAGACCAGACGAGTCAATTCTACATCTTGCTGGTTCAACTGTTGACTTGAAATCTTTCAGTTCAGGTCTGGAATTAGCAGAGGCTCATAATTCTCTTCTGGCTGAGGAGGAGGCAACCGCATTATCTATATGGGCTGTAGCGTGCATGTGTGGTACTTTGAGACTTGAAAATGTGTTAACGTTCTTTGCAGGAGCTCTACTGGAGAAGCAGATAGTTTTTGTCTGTTCTAATTTGGGAATCCTATCTGCATCGGTTTTATCAGTTATTTCACTAATCCGGCCCTACCAATGGCAGAGCTTGCTAATGCCGGTTCTACCAAATGACATGCTTGAGTTTCTGGATGCACCAGTCCCATACATTGTTGGTATCAAAAACAAGACCAATGAAGTTCAGTCGAAGTTAACTAATAATGTAATCCTGGTTGACGCCAACAGGAATCAGGTGAAGTCATCAACAATACCTCAACTGCCAAGGCAGAAAGAGTTAATCTCTTCTTTGCGCCCTTATCATTCAACTCTTGTGGGAGAAAGTTACTTGGGTAGGAGAAGGCCGGTGTATGAATGCACAGAGGTGCAGGTAGAAGCTGTCAAGGGGTTCTTATCGGTGTTAAGGTCTTATTTGGATTCCCTTTGCCATAACATTCGTTCTCATACAATAACCAATGTACAATCCAATGATGATAAGGTATCCTTGCTTTTGAAGGAGAGTTTCATCGACTCATTTCCTTATCGTGATCGGCCTTTCATGAAGTTTATTTTTCAACTACTGAAGCTGTTAGTGGGATATATCTATCTATCTATATCCGATGACAAGCTTCTATCTGTATCATGTGGATCCTTTACCATGTGGCTGTTGAGTGTCTTATCAGTGGAAACATATGGGTGA 2490 0.412 MAGMSKEEVAGSPRWGGSIIMQTTEDVARAVAAAVNSPRPSVIYSSKNDHGGNQLQRLQYQVTKMLKGFSRPPEVKYTNYNPEILTTQKRQWAANFQLQYMDHRSWKEPTKLFESMVVVGLHPNCDIQALQRQYFLRKSEGPGKLRNALGYQNQSRVEPCLEPQVLFVYPPEKKLPLKDKDLLSFCFPGGLEVNAVERTPSMSELNEILFGQEHLKQRDLSFVFRLQGADSSTLYGCCVLVEELVQNPSGLLSLISDKQSSYSSLKRERHILTTQRCYCILSRLPFFELHFGVLNSIFMQERLDRLTKNIGDLNLEYVEGSMEEETLGEDSECMLVNDRLDDRHDDSPTISPSSLRNSSPKNIEDDSHYPKKQIVNRELHTFNDRVNDNNAVPCDSENDRNIVKDESGPTHADDNDLYGDAFVTNKQSEDRRLPNAILPLLRNCQYESSESSCSFQGSPCDDRNFRSDADDTETEDASFSGQEDLNDLNGILEWAKANNCVPLQIISEYYCLSCPARGSSLRFHPLEHLHPLEYHRPDESILHLAGSTVDLKSFSSGLELAEAHNSLLAEEEATALSIWAVACMCGTLRLENVLTFFAGALLEKQIVFVCSNLGILSASVLSVISLIRPYQWQSLLMPVLPNDMLEFLDAPVPYIVGIKNKTNEVQSKLTNNVILVDANRNQVKSSTIPQLPRQKELISSLRPYHSTLVGESYLGRRRPVYECTEVQVEAVKGFLSVLRSYLDSLCHNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRPFMKFIFQLLKLLVGYIYLSISDDKLLSVSCGSFTMWLLSVLSVETYG* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00393 829 ProSiteProfiles Tripartite DENN domain profile. 147 809 IPR037516 -
Lapu9g00393 829 Pfam uDENN domain 163 240 IPR005113 -
Lapu9g00393 829 Gene3D - 577 743 IPR043153 -
Lapu9g00393 829 PANTHER DENN DOMAIN-CONTAINING PROTEIN 2 45 787 - -
Lapu9g00393 829 SMART DENN_cls 273 681 IPR001194 -
Lapu9g00393 829 MobiDBLite consensus disorder prediction 398 413 - -
Lapu9g00393 829 MobiDBLite consensus disorder prediction 340 370 - -
Lapu9g00393 829 Gene3D - 100 310 - -
Lapu9g00393 829 Pfam DENN (AEX-3) domain 565 679 IPR001194 -
Lapu9g00393 829 SMART uDENN_cls 109 242 IPR005113 -
Lapu9g00393 829 MobiDBLite consensus disorder prediction 386 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00393 Lapu-Chr9 4171444 4184211 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00393 - - var:108331642 1395.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00393 9 4171444 4184211 Lapu9g00393 9 4171444 4184211 ECH
Lapu3g00491 3 5032329 5046867 Lapu9g00393 9 4171444 4184211 PCT