Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00491 ATGACTGGAATGTCTACGGAAGAAGGATCCGCTAGTCCTAGTTGGGGTGCTTCATTTTTTATGCAGACAAAAGAGGATGTGGCTAGAGCTGTTGCTGCGGCTGTTAACTCTCCAATGTCATCAAAAGATGATAATAGTGGTAGCCAACTTCAAAGGCTTCAGTATCAATTTGCTCGAATGTTGAAAGGCTTTGCACACTCTCCTGACGTTGAAAACACAAATTACAATCCCGAAATCCTAACTAGTCTGAAGCGTCAGTGGGCTGCAAACTTTCAGTTGCAGTACATGGACCATAAGACTTGGAAGGAGCCCTCACGACTATTTGAGAGTATGGTGATTGTCGGACTTCATCCTAATTGTGATGTTCAGGCACTGCAAAGGCGATATGTTGATAGGAAGTTTGAAGGCTCTGCTAAATTGAGAAGTGCACTTGGTTATCAGAGTCAATCTTGTGTAGAACCCAATATTGAACCTCAGGTCTTATTTGTTTACCCTCCAGAAAAACAGCTGCCTCTTAAATGCAAAGATCTGTTTTCTTTCTGCTTCCCAGGAGGCTTAGAGGTCCGTGCTGTTGAGAGAACCCCTTCCATGAGTGAGTTGAATGAAATTCTTTTTGGGCAGGAACACCTTAAACAAAGGGATTTGTCATTTGTATTCAGGTTACAGGGTGCTGACAACTCAACACTTTATGGGTGTTGTGTCATAGTTGAAGAACTAGTGGAAAAGCCTTCTGGATTGCTTTCTCTGATTTCTGATAAGCAGCCTTCTTACTCGTCTTTGAGACGACATATACTAACCACTCAGAGATGTTACTGCATTCTTTCAAGGCTTCCAGCTTTTGAATTGCACTTTGGTGTATTGAATAGCATCTTCACACAAGAAAGGCTAGATCGGTTGACAAGAAGTGTTGGAGATTTAAATTTAGAATTTGATGAAGGTAATAACTATAAGGAAGAAAATCCAGAAGGCTACTCAGAGAGTGCTTTGGTGAGTGGTGGACCAATAGAAAATAGACTTGGTGGAAATTCAATAATTTCTCCATTAAGAGGAGGAAAGTCTACACCTGAAAACAAAGTGGATGATGGTCAACCAGAGCAACTAGTGGTTGATGGGGAGCTGCAGACATATAAGGAGAGAATCAACCATGACGATATGTTGCTTACTAATCCTATAACAGATAGTGCAACAGCCAAAGAAGATTCTGGTCCTACAAATTCTGAAAATAGCGATCAGTATGGAGATGCCTTTGCTACAAACAAACAGTCAGAAGACAAACATTTACCTAATGCTATTTTGCCCCTCCTGCGCTATTGCCAGTATGAAAGCTCTGAATCTTCCTGCAGTTTTCAAGGATCACCTTGTGAAGACAGAAATTTTAGAAGTGACGTTGATGATAATGAGACAGAAGAAGCATCTTTCTCCGGCCAAGAGGATTTAAGTGACCTGAATGATATTCTTGAATGGGCAAAGGAAAATAACCATGGACCACTACAAATTATAAGCGAGTATTACCTTCTAAGTTACCCTGCCAGGGGCTCATCACTTACATTTCATCCTTTGGAGCACTTGCATCCCTTGAAATATCAGAGATCGGCTGAGTCAGTTCTACATCTTGCTGGCTCAACAGTTGATTTGAAAACGTCTAGTACTGGTCTGGAATTGGTTGATGCACATATTGCTCTCGTGGTGGAAGAGGCAAATGCTTTATCTGTATGGGCTGTAGCTTGCTTGTGCGGTACATTGAGACTTGAAAATGTGTTAACATTTTTTGCAGGAGTTCTACTAGAGAAGCAGATAGTCGTTGTCTGTTCTAATTTGGGAATCCTATCTGCTTCAGTTTTATCAGTTATTCCGCTAATCCAGCCTTACCGGTGGCAAAGCCTACTAATGCCGGTTTTACCAAACGACATGCTTGACTTTTTAGATGCACCTGTCCCTTATGTAGTTGGTATCAGGAACAAGACCAGTGAAGTTCAGTCAAAGTTTACCAATGTTATTCTAGTTGATGCCGATAGGAACCAGGTGAAGTCACCAACATTACCGCAACTGCCAAGACAGAAAGAGCTAGTCTCATCTTTACGTCCTTATCATGCAACTCTTGTAGGAGAAAGTTACTTGGGTAGGAGAAGGCCAGTATATGAATGCACGGAAGTGCAGATTGAAGCTGCAAAGGGATTCCTTTCAGTGTTAAGATCTTACTTGGATTCTCTTTGCTATAACATCCGTTCTCACACGATCACCAATGTACAATCCAATGATGATAAGGTATCATTGCTTCTGAAGGAGAGTTTCATTGACTCGTTCCCATATCGGGATCGGCATTTTATGAAGCTTTTCGTGGATACACAGCTTTTTTCTGTACATACGGACCTTGTTCTCTCTTTCTTACAAAAGGAATAG 2400 0.4138 MTGMSTEEGSASPSWGASFFMQTKEDVARAVAAAVNSPMSSKDDNSGSQLQRLQYQFARMLKGFAHSPDVENTNYNPEILTSLKRQWAANFQLQYMDHKTWKEPSRLFESMVIVGLHPNCDVQALQRRYVDRKFEGSAKLRSALGYQSQSCVEPNIEPQVLFVYPPEKQLPLKCKDLFSFCFPGGLEVRAVERTPSMSELNEILFGQEHLKQRDLSFVFRLQGADNSTLYGCCVIVEELVEKPSGLLSLISDKQPSYSSLRRHILTTQRCYCILSRLPAFELHFGVLNSIFTQERLDRLTRSVGDLNLEFDEGNNYKEENPEGYSESALVSGGPIENRLGGNSIISPLRGGKSTPENKVDDGQPEQLVVDGELQTYKERINHDDMLLTNPITDSATAKEDSGPTNSENSDQYGDAFATNKQSEDKHLPNAILPLLRYCQYESSESSCSFQGSPCEDRNFRSDVDDNETEEASFSGQEDLSDLNDILEWAKENNHGPLQIISEYYLLSYPARGSSLTFHPLEHLHPLKYQRSAESVLHLAGSTVDLKTSSTGLELVDAHIALVVEEANALSVWAVACLCGTLRLENVLTFFAGVLLEKQIVVVCSNLGILSASVLSVIPLIQPYRWQSLLMPVLPNDMLDFLDAPVPYVVGIRNKTSEVQSKFTNVILVDADRNQVKSPTLPQLPRQKELVSSLRPYHATLVGESYLGRRRPVYECTEVQIEAAKGFLSVLRSYLDSLCYNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRHFMKLFVDTQLFSVHTDLVLSFLQKE* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00491 799 ProSiteProfiles Tripartite DENN domain profile. 138 799 IPR037516 -
Lapu3g00491 799 MobiDBLite consensus disorder prediction 313 332 - -
Lapu3g00491 799 MobiDBLite consensus disorder prediction 445 476 - -
Lapu3g00491 799 MobiDBLite consensus disorder prediction 393 414 - -
Lapu3g00491 799 Pfam DENN (AEX-3) domain 553 673 IPR001194 -
Lapu3g00491 799 MobiDBLite consensus disorder prediction 341 366 - -
Lapu3g00491 799 SMART DENN_cls 266 673 IPR001194 -
Lapu3g00491 799 PANTHER DENN DOMAIN-CONTAINING PROTEIN 2 40 789 - -
Lapu3g00491 799 Pfam uDENN domain 158 236 IPR005113 -
Lapu3g00491 799 SMART uDENN_cls 104 237 IPR005113 -
Lapu3g00491 799 Gene3D - 569 735 IPR043153 -
Lapu3g00491 799 Gene3D - 95 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00491 Lapu-Chr3 5032329 5046867 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00491 - - gmx:100801645 1453.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00491 3 5032329 5046867 Lapu3g00491 3 5032329 5046867 ECH
Lapu3g00491 3 5032329 5046867 Lapu9g00393 9 4171444 4184211 PCT