Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00371 ATGGTGGAGAATTCAGGGGTACTCGGGTGGTTCCTCCTCAACCCCAAAACGCCACCTTTCGCTTCTCACAAGACCCTCTTCGCGTTCCTATGGGCGGCGACGCTGGCCTCGGTTTTCGTGTGGCAGAGGAACACGATCAGTGGGTTTCTGGTATTGGGTGGTGTTCCTCAGCGGCCGCCGCCGAAGCTGCGGCCGGTGGTTTTCTGTTTGACTGAGTTTGGTGGGGTCGGTGACGGCGTTACTCTCAACACTGAGGCGTTTGAGAGAGGTGTTAGAGCGATTTCCAAGTTGGGGAATAAGGGTGGTGGCCAACTCAATGTGCCACCTGGACGTTGGCTCACTGCACCCTTCAATCTCACCAGTCACATGACTCTTTTTCTTGCTTCTGATGCTGTTATACTCGCAATTCAGGACGAAAAGTATTGGCCACTGATGCCTGCATTGCCTTCGTATGGGTATGGAAGGGAGCATCCCGGGCCTCGATATACCAGTTTGATCCATGGTCAAAATCTTAGAGATGTTGTCATAACAGGGCATAATGGTACCATAAACGGACAGGGACAAACATGGTGGTCAAAATATCGCCAAAAGCTTCTGAACCACACTAGAGGGCCACTTGTTCAGATATTATGGTCTAGTAACATTGTGATCTCAAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAAAATGTTACAGTAAAAAATGTTACCATATTGGCTCCTGTATATCACGCTCCAAATACTGATGGCATAGATCCTGGCAAGTATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGATGGGATCAATATGGAATTACTTATGGAAGACCTTCCAGGAATATAGTAATTCGGAACCTTGTTGTTCGCTCTAATGTCAGTGCTGGCATCTCAATAGGAAGTGAGATGTCTGGTGGGGTATCCAACGTCCTGGTGGAGAACATTCTGGTATGGGAATCAAGGCGTGCCATGAGAATCAAGACTGCACCAGGAAGAGGTGGATACGTGCGCCAAATAACATACAGGAACCTAGTTTTCAAAAACGTGCGTGTTGGAATTGTGATGAAGACAGATTACAATGAACACCCTGGTGGTGGATACGATCCTAAAGCACTTCCAATACTCAGAGACATAAGCTTCATCAATATCCGTGGTCAAGGAGTTCGCGTGCCAGTTCGAATTCAAGGCAGTGAACAGATTCCAATAAGAAATGTGACATTCCAGGACATGCAGGTTGGCATAACCAACAAGAAGAAGCATATCTTCCAGTGTGCCTTTGTCCAAGGTCAGGTAATAGGGACCATCTCTCCTGCTCCATGTGACAACTTTGATCGCTACAATGAGCAAGGGCAGCTTGTTAAGCATGCTGCTTCACAGAACGTGACAGATATAGATTATGAAATTTGA 1467 0.4642 MVENSGVLGWFLLNPKTPPFASHKTLFAFLWAATLASVFVWQRNTISGFLVLGGVPQRPPPKLRPVVFCLTEFGGVGDGVTLNTEAFERGVRAISKLGNKGGGQLNVPPGRWLTAPFNLTSHMTLFLASDAVILAIQDEKYWPLMPALPSYGYGREHPGPRYTSLIHGQNLRDVVITGHNGTINGQGQTWWSKYRQKLLNHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTVKNVTILAPVYHAPNTDGIDPGKYSCEDMLIEDCYISVGDDAIAIKSGWDQYGITYGRPSRNIVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYRNLVFKNVRVGIVMKTDYNEHPGGGYDPKALPILRDISFINIRGQGVRVPVRIQGSEQIPIRNVTFQDMQVGITNKKKHIFQCAFVQGQVIGTISPAPCDNFDRYNEQGQLVKHAASQNVTDIDYEI* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00371 488 SMART pbh1 327 348 IPR006626 -
Lapu9g00371 488 SMART pbh1 265 286 IPR006626 -
Lapu9g00371 488 SMART pbh1 299 321 IPR006626 -
Lapu9g00371 488 SMART pbh1 356 377 IPR006626 -
Lapu9g00371 488 SMART pbh1 235 262 IPR006626 -
Lapu9g00371 488 Pfam Glycosyl hydrolases family 28 163 447 IPR000743 GO:0004650|GO:0005975
Lapu9g00371 488 PANTHER PECTIN LYASE-RELATED 43 471 - -
Lapu9g00371 488 SUPERFAMILY Pectin lyase-like 60 461 IPR011050 -
Lapu9g00371 488 Gene3D - 55 452 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00371 Lapu-Chr9 3937951 3942272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00371 20 488 Glycoside Hydrolase AT3G42950 72.765 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00371 - - gmx:100791187 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00371 9 3937951 3942272 Lapu9g00371 9 3937951 3942272 ECH
Lapu3g00467 3 4801508 4811004 Lapu9g00371 9 3937951 3942272 PCT