Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00467 ATGGTGGAGACCTCCACGCTAGGGCGCTTCCACCACCAAAGGCTCGACCTTCGCCGCTGCCTCCCCGCCTTCCTCACCTCCCACAAGACCCTCTTCACCGTCCTCTGGATCGCCGCCTTCGCCTCCGTTTTCCTCTGGCAGAGGAACATTGTCGGCGGTTTCCTCGTATTTGGCGCTCCTCCGGCCCGGCCCATGCCCAAGCTCCGCCCCACCGCCTTCAATTTAACGGATTTCGGAGGTGTCGGTGACGGCGTCACTCTCAACACCGAGGCCTTCGAGAGGGCCGTTTCCGCGATTTCGAAGTTTGGGAAGAAAGGCGGTGCGCAGTTAAACGTGCCTCCCGGACGCTGGCTTACGGCGCCGTTTAATCTCACCAGCCACATGACTCTGTTTCTAGCTCAAGATGCTGTTATTCTCGGCGTTGATGATGAAAATTATTGGCCACTGATGGCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCACGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATGTTGTGATAACAGGGCATAATGGTACCATAAATGGTCAAGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACTAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTGATCACTAATATTACTTTGCGTGACTCTCCTTTCTGGACACTTCATCCATATGACTGCAAAAACATTACGATAAAAGGTGTAACTATCCTGGCTCCTGTGTTTGAAGCTCCTAATACTGATGGCATAGATCCTGATTCTTGTGAGGACATGTTGATAGAGGATTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTTCATATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGCGTCTCAATAGGCAGTGAGATGTCTGGCGGGGTATCCAACATCACGGTGGAGAATCTTCTTATATGGGATTCTAGGCGCGGTGTGAGGATCAAAACCGCCCCTGGTCGAGGAGGATATGTGCGCCAAATAACTTATCGGAATCTAACATTTGAGAATGTCCGTGTTGGAATTGTGATGAAGACAGATTACAATGAACACCCTGATGATGGGTATGACCCTACGGCACTCCCCATTCTCCGAGACATAAGCTTTACCACAGTCCATGGCCAAGGGGTTCGCGTGCCAGTACGTATACACGGAAGTGAAGAAATTCCTGTGAAAAATGTGACTTTTCAAGACATGTCAGTTGGTCTAACCTACAAGAAGAAGCACATATTTCAGTGTGCCTTTGTTGAAGGGCGTGTAATAGGGACCATCTTTCCTGCTCCCTGTGAGAATCTTGATCGGTACAATGAGCACGGAGAGCTGGTTAAGCATTCTGCTTCCCAGAATGTGACAGATATAGATTATGATTTTTGA 1476 0.4871 MVETSTLGRFHHQRLDLRRCLPAFLTSHKTLFTVLWIAAFASVFLWQRNIVGGFLVFGAPPARPMPKLRPTAFNLTDFGGVGDGVTLNTEAFERAVSAISKFGKKGGAQLNVPPGRWLTAPFNLTSHMTLFLAQDAVILGVDDENYWPLMAPLPSYGYGREHPGPRYGSLIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQIMWSSDIVITNITLRDSPFWTLHPYDCKNITIKGVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGISYGRPSMNIMIRNLVVRSMVSAGVSIGSEMSGGVSNITVENLLIWDSRRGVRIKTAPGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDDGYDPTALPILRDISFTTVHGQGVRVPVRIHGSEEIPVKNVTFQDMSVGLTYKKKHIFQCAFVEGRVIGTIFPAPCENLDRYNEHGELVKHSASQNVTDIDYDF* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00467 491 PANTHER PECTIN LYASE-RELATED 45 474 - -
Lapu3g00467 491 SMART pbh1 330 351 IPR006626 -
Lapu3g00467 491 SMART pbh1 240 267 IPR006626 -
Lapu3g00467 491 SMART pbh1 302 324 IPR006626 -
Lapu3g00467 491 SMART pbh1 359 380 IPR006626 -
Lapu3g00467 491 SMART pbh1 268 289 IPR006626 -
Lapu3g00467 491 Pfam Glycosyl hydrolases family 28 168 450 IPR000743 GO:0004650|GO:0005975
Lapu3g00467 491 SUPERFAMILY Pectin lyase-like 61 464 IPR011050 -
Lapu3g00467 491 Gene3D - 62 452 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00467 Lapu-Chr3 4801508 4811004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00467 9 490 Glycoside Hydrolase AT1G19170 75.960 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00467 - - gmx:100818529 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00467 3 4801508 4811004 Lapu3g00467 3 4801508 4811004 ECH
Lapu3g00467 3 4801508 4811004 Lapu9g00371 9 3937951 3942272 PCT