Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00319 ATGGTTTCAATGTCTCTCTGTCTTTCTTCTTCCATTCTTCCTTCTCCCATTCCCCACAACAAATTCCCCACAACCCGAGATCCGATTTTTCGGTTCACCCGCTTCTCAGTTTCAGCTCCATCAAAAACCAGTGTCTCTGCCTCTTCTACCCGAAAACCAGCTCCAGCAACCAGGACCAGAAACCCGAAAGATAAGGAATTTTCCCAAACACTGTTCTTTGAGGGTATGGAGAAGACACCCATAAAGAAGAAGAAGAAAAAGAAGGAGAAAATGAAGAGTGATAAGGTCTGGGTTCACAATCTCCCTGAAGTCTTATACTATCACATTCATAAGAAGGACTGGAGTATTACCCTTGAGTTATTTGACATGCTTAGAGGCCAACCCTATTACCAAGCCAGAAAAGATACTTACATGAGACTCATTGTGTTGCTTGGAAAATCTGGCCAACCTCATCGTGCCAATGAGCTTTTTAACTCTATACATGAAGATGGTTGTGAAAGTACTGAACTTTACACGGCCTTAATTGTTGCGTATTGTCGAAATAATCTGGTTGATGAAGCATTGTCAATTCTTGATGAGATGATGAACATCCCCAATTGCCAGCCTGATATTTTTACTTACAGTACCTTGATGAAAGCTCTTGTGGATGCTTTGAAGTTTGAAATGGTTGAGTTGGTGTATGATAAAATGATTGAAAGATCTATCATGCCAAATACTCTCACCCAGAACCTCCTCCTGAGTAGTTATGGTAAGACTGGGAGGTCGGATCAGATGGAGAAAATAGTGTCAAGTATGATGGAGAGTACTACCTGCAAGCCTGACGTTTGTACAATGAACGCAGTCATCAGCGTCTTTCGTGACAAGGGTCAGATTGATATGATGGAGAAATGGTATGAGAAATTTTATAGCTTTGGGATACAACCAGAAAGGAGCACTTTTAATATTTTAATGGGAGCTTATAGTAAAAAAAGAATGTACGACAAAATGTCATCAGTTATGCAGTGTATGCGCAAGGAAAAATGTCCATGGACTACCCCAACTTATAACTTCGTGATTGAGGCATTTGCAGATGTAGGTGATGCTGCAAACATGGAACGTGCATTTGATCAAATGGTTACTGAGGGTTTGAAAGCAGATACTAAGACATTCTGCTGCCTTATCAATGGCTATGCTAATGCAGGAATCTTCTATAAAGTAATGAGCAGTGTTGTTTTGGCTGAGAAGCTTCAGATACATATGAATACTTCATTTTACAATGCAGTCATATCTGCCTGTGCCAAGGAGGATTCTTTGATTGAAATGGAAAGATTTTTCAAGCGTATGAAAGAAAAAGAATGTCAACCAGATGACACAACATACTCTGTCATGATTGAAGCATATGGAAAAGCAAGTATGAACGACAAAATATACTATTTGGAGCAAGAAAAACAGATGATGCTATCTGATGAGAAAAATTTGAAGGAGCCTCAGGAGACAACCTTTGATTGA 1488 0.3965 MVSMSLCLSSSILPSPIPHNKFPTTRDPIFRFTRFSVSAPSKTSVSASSTRKPAPATRTRNPKDKEFSQTLFFEGMEKTPIKKKKKKKEKMKSDKVWVHNLPEVLYYHIHKKDWSITLELFDMLRGQPYYQARKDTYMRLIVLLGKSGQPHRANELFNSIHEDGCESTELYTALIVAYCRNNLVDEALSILDEMMNIPNCQPDIFTYSTLMKALVDALKFEMVELVYDKMIERSIMPNTLTQNLLLSSYGKTGRSDQMEKIVSSMMESTTCKPDVCTMNAVISVFRDKGQIDMMEKWYEKFYSFGIQPERSTFNILMGAYSKKRMYDKMSSVMQCMRKEKCPWTTPTYNFVIEAFADVGDAANMERAFDQMVTEGLKADTKTFCCLINGYANAGIFYKVMSSVVLAEKLQIHMNTSFYNAVISACAKEDSLIEMERFFKRMKEKECQPDDTTYSVMIEAYGKASMNDKIYYLEQEKQMMLSDEKNLKEPQETTFD* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00319 495 NCBIfam pentatricopeptide repeat 170 196 IPR002885 -
Lapu9g00319 495 NCBIfam pentatricopeptide repeat 241 275 IPR002885 -
Lapu9g00319 495 NCBIfam pentatricopeptide repeat 312 344 IPR002885 -
Lapu9g00319 495 NCBIfam pentatricopeptide repeat 205 239 IPR002885 -
Lapu9g00319 495 NCBIfam pentatricopeptide repeat 418 449 IPR002885 -
Lapu9g00319 495 Gene3D Tetratricopeptide repeat domain 267 373 IPR011990 GO:0005515
Lapu9g00319 495 Gene3D Tetratricopeptide repeat domain 99 266 IPR011990 GO:0005515
Lapu9g00319 495 MobiDBLite consensus disorder prediction 43 63 - -
Lapu9g00319 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 202 IPR002885 -
Lapu9g00319 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Lapu9g00319 495 PANTHER EXPRESSED PROTEIN 28 476 IPR044179 GO:0003729
Lapu9g00319 495 Pfam PPR repeat family 346 392 IPR002885 -
Lapu9g00319 495 Pfam PPR repeat family 273 321 IPR002885 -
Lapu9g00319 495 Pfam PPR repeat family 170 215 IPR002885 -
Lapu9g00319 495 Pfam PPR repeat family 414 460 IPR002885 -
Lapu9g00319 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Lapu9g00319 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Lapu9g00319 495 Gene3D Tetratricopeptide repeat domain 395 479 IPR011990 GO:0005515
Lapu9g00319 495 Pfam PPR repeat 243 267 IPR002885 -
Lapu9g00319 495 Pfam PPR repeat 136 165 IPR002885 -
Lapu9g00319 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 273 IPR002885 -
Lapu9g00319 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Lapu9g00319 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00319 Lapu-Chr9 3221794 3224450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00319 120 468 Miscellaneous Gene Families AT4G11690 23.714 2.38e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00319 - - gmx:100776657 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00319 9 3221794 3224450 Lapu9g00319 9 3221794 3224450 ECH
Lapu3g00387 3 3956228 3958763 Lapu9g00319 9 3221794 3224450 PCT