Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00387 ATGGCTTCCCTATCTCTCTCCTTTTCTTCTTCCATTGTTCCCTCTCCAATTCCCCACCACAAATCCAACAAAATCCACACTCAGCACCCCTCTTTTAGGGTTACCTGCTTCGCCATTTCCTCTCCCCCCTCCAAACCCGTCGTCAAAAAACGACACTGGAAAAAAGGTGAATTTCCTGGTACTTCCGAAACATTGTTACACGATAGTACGAGAAGGACCCCCATCAAGAACATCAAGAAGAAGTTGGATAAAAAGAACAGTGCGAAGGCATGGGTCAACACTGTCACCGAATCCTTATCCGAACAAATCGACAAGAAGCAGTGGCTTCAAGCCCTTCAGGTATTTGATATGCTTAGACAACAAACCTTCTACCAACCCAAGGAAGGGGCTTACATGAAACTCATTGTGCTGCTTGGAAAATCTGGTCAACCCCACCGTGCCCACCAACTTTTCACCACAATGATTGAAGAAGGTTTAGAACCTACTCCTCATCTGTACACAGCATTGCTTGCTGCGTATTGCAGGAGCAACCTTATTGATGAAGCTTTTTCAGTTCTTAATGAGATGAAGAAACTTCCTCTTTGCCAGCCTGATGTTTTCACTTACAGTACCTTGATCAAAGTTTGTGTGGATGCTTTCAAATTTGATTTGGTTGAGTTACTGTATGAAGAAATGGCTGAAAGGTCCATCATGCCAAACACAGTGACTCAGAACATTGTTTTGGGTGGTTATGGTAAGGCGGGGAAGTTTGATCAGATGGAGAAAGTGCTTTCCAGCATGCTGGAGAGCACTATGTGCAAGCCTGATGTTTGGACAATGAACACGATCATCAGTGTCTTTGGGAACATGGGTCAGATTGATATGATGGAGAAATGGTATGAAAAATTCCGTAATTTTGGGATAGAACCTGAGACTCGCACTTTTAATATTTTGATTGGCGCGTATGGGAAGAAAAGAATGTATGACAAAATGTCATCTGTTATGGAGTATATGCGCAAGTTGCAATTTCCATGGACAACCTCGACTTATAACAATGTGATTGAGGCATTTGCAAATGCAGGTGACGTGAGGCACATGGAGTGTACATTTGATCAGATGCGTGCTGAGAGTATGAAAGCAGATACCAAAACTTTCTGCTGCCTTATCAATGGTTATGCAAATGCAGGTCTCTTTCATAAAGTAATTAGCAGTGTTCACTTGGCTGGAAAGTTTGAGATACCTGAGAATATTGCCTTTTATAACGCAGTCTTATCTGCATGTGCAAAGGCAGAGGATTTGATGGAAATGGAAAGAGTTTTTAAGCGTATGAAAGATAACCAATGTCAACCAGACGAAACAACATACATGATCATGATTGAAGCATATAGAAAAGATGGTATGAATGACAAAATATTCTATTTGGAGCAGGAAAAGCAGAAAATGATAACTGACAACGAAAAAATGAGCCGTGGTTTCGAGGATGAACACTTTAGTTTAGACAGCTAA 1485 0.4148 MASLSLSFSSSIVPSPIPHHKSNKIHTQHPSFRVTCFAISSPPSKPVVKKRHWKKGEFPGTSETLLHDSTRRTPIKNIKKKLDKKNSAKAWVNTVTESLSEQIDKKQWLQALQVFDMLRQQTFYQPKEGAYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPHLYTALLAAYCRSNLIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSIMPNTVTQNIVLGGYGKAGKFDQMEKVLSSMLESTMCKPDVWTMNTIISVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFANAGDVRHMECTFDQMRAESMKADTKTFCCLINGYANAGLFHKVISSVHLAGKFEIPENIAFYNAVLSACAKAEDLMEMERVFKRMKDNQCQPDETTYMIMIEAYRKDGMNDKIFYLEQEKQKMITDNEKMSRGFEDEHFSLDS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00387 494 Gene3D Tetratricopeptide repeat domain 335 396 IPR011990 GO:0005515
Lapu3g00387 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Lapu3g00387 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Lapu3g00387 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Lapu3g00387 494 NCBIfam pentatricopeptide repeat 272 303 IPR002885 -
Lapu3g00387 494 NCBIfam pentatricopeptide repeat 200 234 IPR002885 -
Lapu3g00387 494 NCBIfam pentatricopeptide repeat 307 335 IPR002885 -
Lapu3g00387 494 NCBIfam pentatricopeptide repeat 165 192 IPR002885 -
Lapu3g00387 494 NCBIfam pentatricopeptide repeat 413 445 IPR002885 -
Lapu3g00387 494 NCBIfam pentatricopeptide repeat 235 269 IPR002885 -
Lapu3g00387 494 NCBIfam pentatricopeptide repeat 342 374 IPR002885 -
Lapu3g00387 494 NCBIfam pentatricopeptide repeat 131 162 IPR002885 -
Lapu3g00387 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Lapu3g00387 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Lapu3g00387 494 Gene3D Tetratricopeptide repeat domain 397 475 IPR011990 GO:0005515
Lapu3g00387 494 Gene3D Tetratricopeptide repeat domain 263 334 IPR011990 GO:0005515
Lapu3g00387 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Lapu3g00387 494 Pfam PPR repeat family 409 455 IPR002885 -
Lapu3g00387 494 Pfam PPR repeat family 165 209 IPR002885 -
Lapu3g00387 494 Pfam PPR repeat family 340 387 IPR002885 -
Lapu3g00387 494 Pfam PPR repeat family 268 315 IPR002885 -
Lapu3g00387 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Lapu3g00387 494 Gene3D Tetratricopeptide repeat domain 93 262 IPR011990 GO:0005515
Lapu3g00387 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Lapu3g00387 494 PANTHER EXPRESSED PROTEIN 22 479 IPR044179 GO:0003729
Lapu3g00387 494 Pfam PPR repeat 131 159 IPR002885 -
Lapu3g00387 494 Pfam PPR repeat 238 263 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00387 Lapu-Chr3 3956228 3958763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00387 116 479 Glycosyltransferase AT1G05670 23.925 1.04e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00387 - - gmx:100786610 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00387 3 3956228 3958763 Lapu3g00387 3 3956228 3958763 ECH
Lapu3g00387 3 3956228 3958763 Lapu9g00319 9 3221794 3224450 PCT