Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00134 ATGGAGGGGGAACCCAGCCAGCTGAAACGGGCAGCGATTGATGCCTCCGCTGGAGCTCTTTCCGGTGCTGTATCCAGGACCGTCACGTCACCTCTTGATGTTATTAAGATTAGGTTCCAGGTTCAACTAGAGCCCACATCTTCATGGACTTCACTACGCAAGAATTTGTCTACTCCTTCAAAATATACCGGCATGGTTCAAGCAAGCAAAGATATTTTCAGAGAAGAAGGCATGCGGGGTTTTTGGCGCGGAAATGTGCCTGCTTTGCTCATGGTTATGCCATATACAAGTATACAATTTACTGTTCTACACATGATGAAGACTTTTGCCTCTGGTTCTTCCAAAACAGAGAATCACATGAAATTGAGCCCTTATCTATCCTATATGAGTGGTGCAGTAGCTGGGTGTGCTGCTACTGTAGGGTCATATCCCTTTGATCTTCTCCGAACCATATTAGCTTCCCAGGGTGAACCAAAGGTTTATCCAAACATGAGAACAGCATTAGTTGATATTGTCCAGACTCGTGGCTTCCAAGGCTTGTATGCTGGATTGTCGCCAACCCTTGTTGAGATTATACCATATGCAGGTCTACAATTTGGCACCTATGATACATTTAAACGTTTGACCGTGGCGTGGAATCATCGTCACTATTCAAATCCCACTGCAGAAAACATCTCTAGCTTTCAGCTTTTCCTCTGTGGGGTGGGTGCAGGAACATGTGCCAAGCTCGCCACTCATCCACTTGATGTGGTCAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCAAGATATGGAGCTCGGATTGAACACCGTGCATACAATAATATGTTTGATGCCATAAAGCGAATATTACAAAGGGAGGGTTGGGCTGGTCTATATAAGGGGATAGTTCCATCAACTGTTAAAGCTGCACCAGCTAATGCTGTAACATTTGTAGCGTATGAATTGACATCAGATTGGCTGGAATCTCTTTTGACTTGA 987 0.4448 MEGEPSQLKRAAIDASAGALSGAVSRTVTSPLDVIKIRFQVQLEPTSSWTSLRKNLSTPSKYTGMVQASKDIFREEGMRGFWRGNVPALLMVMPYTSIQFTVLHMMKTFASGSSKTENHMKLSPYLSYMSGAVAGCAATVGSYPFDLLRTILASQGEPKVYPNMRTALVDIVQTRGFQGLYAGLSPTLVEIIPYAGLQFGTYDTFKRLTVAWNHRHYSNPTAENISSFQLFLCGVGAGTCAKLATHPLDVVKKRFQIEGLQRHPRYGARIEHRAYNNMFDAIKRILQREGWAGLYKGIVPSTVKAAPANAVTFVAYELTSDWLESLLT* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00134 328 PANTHER SOLUTE CARRIER FAMILY 25 15 323 - -
Lapu9g00134 328 FunFam Mitochondrial thiamine pyrophosphate carrier 1 5 325 - -
Lapu9g00134 328 SUPERFAMILY Mitochondrial carrier 10 317 IPR023395 -
Lapu9g00134 328 Pfam Mitochondrial carrier protein 14 110 IPR018108 -
Lapu9g00134 328 Pfam Mitochondrial carrier protein 122 209 IPR018108 -
Lapu9g00134 328 Pfam Mitochondrial carrier protein 225 323 IPR018108 -
Lapu9g00134 328 PRINTS Mitochondrial carrier protein signature 84 104 IPR002067 GO:0055085
Lapu9g00134 328 PRINTS Mitochondrial carrier protein signature 27 41 IPR002067 GO:0055085
Lapu9g00134 328 PRINTS Mitochondrial carrier protein signature 137 155 IPR002067 GO:0055085
Lapu9g00134 328 PRINTS Mitochondrial carrier protein signature 234 256 IPR002067 GO:0055085
Lapu9g00134 328 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Lapu9g00134 328 PRINTS Mitochondrial carrier protein signature 14 27 IPR002067 GO:0055085
Lapu9g00134 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 322 IPR018108 -
Lapu9g00134 328 Gene3D Mitochondrial carrier domain 6 325 IPR023395 -
Lapu9g00134 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 109 IPR018108 -
Lapu9g00134 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 208 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00134 Lapu-Chr9 1206290 1210825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00134 4 328 Organic Solute Cotransporters AT3G21390 72.121 4.23e-180 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00134 K15108 - gmx:100783563 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00134 9 1206290 1210825 Lapu9g00134 9 1206290 1210825 ECH
Lapu3g00254 3 2664548 2670035 Lapu9g00134 9 1206290 1210825 PCT