Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00254 ATGGAGGAATCCAGTAAACTGAAGCGTGCGGTGATTGATTCCTCGGCCGGAGCAATTTCTGGTGGAATATCACGGACCGTTACCTCGCCCCTCGATGTTATTAAGATTCGATTTCAGGTTCAACTGGAGCCCACGTCTTCATGGGCTTTACTACGCAAGGATTTGGCTGCAGCTGCTGCAGCACCATCAAAATATACTGGCATGTTTCAAGCAACCAAGGATATTCTTAGAGAAGAAGGCGTTCAGGGATTTTGGCGGGGAAATGTCCCGGCATTGCTCATGGTTATGCCATATACAGCTATACAATTTACAGTTTTACACAAGTTAAAGACTTTTGCCTCTGGCTCTTCCAAGACAGAGAATCACATTAATTTGAGCCCTTATCTATCCTATGTCAGTGGAGCGTTAGCTGGGTGTGCAGCTACAGTAGGTTCATATCCCTTTGATCTTATCCGAACCATACTAGCTTCTCAGGGTGAACCAAAGGTATATCCAACCATGAGATCAGCATTCATGGAAATTGTCCGTACTCGTGGATTCCATGGCTTGTATTCTGGATTGTCCCCTACCCTAGTGGAGATTATACCTTATGCAGGCTTACAATTTGGCACGTATGATACATTTAAGCGTTGGGCCATGGCTTGGAATCATGGATATTCCAACACTGCTGTAGAAGACAACCTCTCCAGCTTTCAGCTTTTCTTGTGTGGGTTGGCAGCTGGAACATGTGCCAAACTTGTCTGTCATCCACTTGATGTCGTCAAGAAAAGATTTCAGATTGAAGGGCTTCAAAGGCATCCAAGATATGGAGCTAGAGTTGAGCATCGTGCATACAGGAATATGTCCGATGCTATGCGACGGATATTGCGGTTAGAGGGTTGGGCTGGTTTGTACAAGGGGATAATCCCGTCAACTATTAAAGCTGCACCTGCTGGTGCTGTTACATTTGTTGCTTATGAATTGACATCAGATTGGCTAGAGTCCACTTTTAGTTGA 996 0.4508 MEESSKLKRAVIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLAAAAAAPSKYTGMFQATKDILREEGVQGFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKTENHINLSPYLSYVSGALAGCAATVGSYPFDLIRTILASQGEPKVYPTMRSAFMEIVRTRGFHGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWAMAWNHGYSNTAVEDNLSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMSDAMRRILRLEGWAGLYKGIIPSTIKAAPAGAVTFVAYELTSDWLESTFS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00254 331 PANTHER SOLUTE CARRIER FAMILY 25 14 326 - -
Lapu3g00254 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 211 IPR018108 -
Lapu3g00254 331 FunFam Mitochondrial thiamine pyrophosphate carrier 1 4 328 - -
Lapu3g00254 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 325 IPR018108 -
Lapu3g00254 331 SUPERFAMILY Mitochondrial carrier 9 320 IPR023395 -
Lapu3g00254 331 Gene3D Mitochondrial carrier domain 5 329 IPR023395 -
Lapu3g00254 331 Pfam Mitochondrial carrier protein 13 113 IPR018108 -
Lapu3g00254 331 Pfam Mitochondrial carrier protein 126 212 IPR018108 -
Lapu3g00254 331 Pfam Mitochondrial carrier protein 228 327 IPR018108 -
Lapu3g00254 331 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Lapu3g00254 331 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Lapu3g00254 331 PRINTS Mitochondrial carrier protein signature 87 107 IPR002067 GO:0055085
Lapu3g00254 331 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Lapu3g00254 331 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Lapu3g00254 331 PRINTS Mitochondrial carrier protein signature 184 202 IPR002067 GO:0055085
Lapu3g00254 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 112 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00254 Lapu-Chr3 2664548 2670035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00254 1 331 Organic Solute Cotransporters AT3G21390 73.810 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00254 K15108 - gmx:100784986 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00254 3 2664548 2670035 Lapu9g00134 9 1206290 1210825 PCT