Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00095 ATGACCATCACAAAGAGAGTAGGTGTTCTTATTATGTACCTTGCACTGGTTTATCATGTGGATGCTGCCAAGAAAATAATGCCAATTGCTGGTCCTGATATCTACAAGAATGAAAACTTAGCTACGGATAAAATTTCTCCTGGAGAAAAGATAAACAATGTCATAAGCTTTGGAGCCAAACCTGATGGCAAGTTTGACTGCACTCAGGCTTTCATGGATGCATGGCAAGCAACTTGCCACTCCAAAGTGCAAGCCAGGCTTGTGGTTCCTAAGGGAAGATTCGTGGTTTCTTCAATGTTTTTCGCAGGTCCATGCGCTACTCCAGAGGCCGTAACAATCCAAGTTATAGGCACTGTTGCGGCTACAGAAGATCTCAGTGAATATGAGAATGGTGAATGGCTCCTGTTTGAGGACTTGGATGGTGTAAAACTCATTGGTGGTGGCACTTTTGATGGCGTGGGTAAGGAATCATGGCTAACGACTACAAACTGTAAAGTAAACCCCTCCGACAGTTGCGTCAGAAACCCTTCTAGTATATATTTCAACAAAGTTAGGAATGGAATTATACAGAACATCAAATCCGTAGACCCCAAAGGCTTTCACATATTTGTGACCAATTCTGCTAACATCAGACTTCGACGACTTAAGCTCAGTGCACCACAAGACAGCCCTAACACCGATGGAATTCATATTAGCCAGTCCGTCAATGTCAAAGTATCCAAAAATACCATTGAAACTGGCGATGATTGTATTGGTATGATACACGGATCCCATGATGTTTCCATCAACAAAATGAATTGTGGTCCTGGACATGGTATTAGTATTGGAAGTCTTGGAAAGTATCAGGATGAGGTAGAAGTGAAAAACATTCGTGTCAAGAACATATCGATGGTTGGCACAACTCATGGCGTCAGAATCAAGACATGGCCAAATAGGTATCCTGGTTCAGCATCAGATATCTCCTTCAGTGACATCATCATGGAAAATGTTAAAAGCCCTATCGTCATTGACCAAGAATATCAATGCTTTTCAAACTGCCAAAACCAGCCTTCACTTGTACAGATAAAAGATATTCGTTTTTCAAATATAAGGGGAACCACTACTTCGCCAATTGCAGTGGATTTAAGGTGTAGCAAGAAGTTCCCTTGCGAACGTGTTAAACTTCAGGACATAAACCTGTCGCTTGGACCCAAGCCTACCGGATCTAGATGTGTCAACATTAAACCAATTTACATGGGCTTGCAGAAACCACCAAATTGTCCATAA 1266 0.4186 MTITKRVGVLIMYLALVYHVDAAKKIMPIAGPDIYKNENLATDKISPGEKINNVISFGAKPDGKFDCTQAFMDAWQATCHSKVQARLVVPKGRFVVSSMFFAGPCATPEAVTIQVIGTVAATEDLSEYENGEWLLFEDLDGVKLIGGGTFDGVGKESWLTTTNCKVNPSDSCVRNPSSIYFNKVRNGIIQNIKSVDPKGFHIFVTNSANIRLRRLKLSAPQDSPNTDGIHISQSVNVKVSKNTIETGDDCIGMIHGSHDVSINKMNCGPGHGISIGSLGKYQDEVEVKNIRVKNISMVGTTHGVRIKTWPNRYPGSASDISFSDIIMENVKSPIVIDQEYQCFSNCQNQPSLVQIKDIRFSNIRGTTTSPIAVDLRCSKKFPCERVKLQDINLSLGPKPTGSRCVNIKPIYMGLQKPPNCP* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00095 421 SMART pbh1 207 233 IPR006626 -
Lapu9g00095 421 SMART pbh1 234 277 IPR006626 -
Lapu9g00095 421 SMART pbh1 317 338 IPR006626 -
Lapu9g00095 421 SMART pbh1 287 308 IPR006626 -
Lapu9g00095 421 Pfam Glycosyl hydrolases family 28 79 408 IPR000743 GO:0004650|GO:0005975
Lapu9g00095 421 PANTHER - 51 406 - -
Lapu9g00095 421 FunFam Pectin lyase-like superfamily protein 40 418 - -
Lapu9g00095 421 SUPERFAMILY Pectin lyase-like 49 420 IPR011050 -
Lapu9g00095 421 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Lapu9g00095 421 Gene3D - 39 418 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00095 Lapu-Chr9 853247 856718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00095 53 420 Glycoside Hydrolase AT4G18180 42.636 1.08e-101 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00095 K01213 - gmx:106796220 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00095 9 853247 856718 Lapu9g00095 9 853247 856718 ECH
Lapu3g00288 3 2939699 2941706 Lapu9g00095 9 853247 856718 PCT