Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00288 ATGGCCATTGCAAAGAGTGCTGTCATTCTTATTTTGCTCTTTGCATTGGCCTGCAATGCGGATAAAGCTCTAAAACTACCACGTATCGCTGGTCCTGACATGTTCAAGAATAAAAATGTAGCTAAGGATGTGCTCCTTCCTGGGGAACAAATAATTAGCGTCATGGATTTTGGAGCCGTAGGTGATGGCAAGTTCGACTGCACCCAGGCTTTCATGTCTGCATGGCAAAAGGTGTGTCACACCGCTGGGCCAGCCAGGCTTTTGGTTCCTCAAGGCAAATTCTTGGTTTCATCAATGTATTTCAGTGGACCATGCAATACTCAAACTCCAATAACAATTCAAGTACAAGGATATGTTATGGCTACCACGGATCTTTCGGAGTACGAAAACGGCGACTGGCTCATATTCCAGAAACACAATGGCTTGAAAATTATTGGCGGGGGCACTTTCGATGGCCAGGGAAAAAATTCATGGGAATACTCCGAGAATTGCGAATCAAGTGCTGACGGTTCTTGCGCCAGGAATCCAAGCAGCCTTTTCTTCAGCGATAGCAGCAACGTGGTTATACAGGGCATCAGAACTGTGAACCCCAAAGGCTTTCACATATTCGTTACCAAATGTACAAACGTAAGATTGAGAAAACTAAAGCTGGTTGCACCGGAAACCAGCCCCAACACTGATGGCATTCATGTCAGCCACTCTGACACTGTGATAATGTCCAGAAACACCATTGCAACTGGAGATGATTGCATCTCTATGATACAAGGAGTAAAAAACGTTTTCATCAACAAACTCAAGTGTGGCCCTGGACACGGTATAAGTATCGGTAGCCTTGGGAAATATCAAGATGAGGAAGAGGTGAGAGGCATTCGCATCCAGAATTGCTCATTGACTGGCACAACCAATGGCCTCAGAGTGAAAGCATGGCCAGATAGATATGCAGGTTCAGCCTCAGATATAAGCTTCAGTCACATTGTCATGCAAAATGTCAAAAACCCTATCATTATTGACGAAGAGTACGAATGTTATCCAGACTGCAAAAAGAAGCCGTCACTTGTAAAGATCCAAAATGTTCATTTCCAAAATGTGAGAGGAACTACAACTTCACCACTTGCAGTGGACTTGAGGTGCAGCAAGCTGTTCGGTTGCCAAGGTGTTACAATTAGAGACATTGACCTGAAGTTTGGAGATGCCCCAACCACCTCAAGATGTGTCAATACTCAACCTCTCTTTGCTGGCGTGTTAATGCCCCCACCTTGCATATAG 1266 0.4479 MAIAKSAVILILLFALACNADKALKLPRIAGPDMFKNKNVAKDVLLPGEQIISVMDFGAVGDGKFDCTQAFMSAWQKVCHTAGPARLLVPQGKFLVSSMYFSGPCNTQTPITIQVQGYVMATTDLSEYENGDWLIFQKHNGLKIIGGGTFDGQGKNSWEYSENCESSADGSCARNPSSLFFSDSSNVVIQGIRTVNPKGFHIFVTKCTNVRLRKLKLVAPETSPNTDGIHVSHSDTVIMSRNTIATGDDCISMIQGVKNVFINKLKCGPGHGISIGSLGKYQDEEEVRGIRIQNCSLTGTTNGLRVKAWPDRYAGSASDISFSHIVMQNVKNPIIIDEEYECYPDCKKKPSLVKIQNVHFQNVRGTTTSPLAVDLRCSKLFGCQGVTIRDIDLKFGDAPTTSRCVNTQPLFAGVLMPPPCI* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00288 421 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lapu3g00288 421 Pfam Glycosyl hydrolases family 28 79 408 IPR000743 GO:0004650|GO:0005975
Lapu3g00288 421 SMART pbh1 287 308 IPR006626 -
Lapu3g00288 421 SMART pbh1 317 338 IPR006626 -
Lapu3g00288 421 SMART pbh1 350 390 IPR006626 -
Lapu3g00288 421 SMART pbh1 234 255 IPR006626 -
Lapu3g00288 421 SMART pbh1 184 204 IPR006626 -
Lapu3g00288 421 SMART pbh1 207 233 IPR006626 -
Lapu3g00288 421 FunFam Pectin lyase-like superfamily protein 41 418 - -
Lapu3g00288 421 PANTHER - 51 406 - -
Lapu3g00288 421 Gene3D - 46 412 IPR012334 -
Lapu3g00288 421 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Lapu3g00288 421 SUPERFAMILY Pectin lyase-like 48 421 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00288 Lapu-Chr3 2939699 2941706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00288 51 420 Glycoside Hydrolase AT4G18180 40.827 8.96e-106 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00288 K01213 - gmx:100800324 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00288 3 2939699 2941706 Lapu3g00288 3 2939699 2941706 ECH
Lapu3g00288 3 2939699 2941706 Lapu9g00095 9 853247 856718 PCT