Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00090 ATGTTTGTGGCATTGCTCTTGCTGGTGGCATTGAGCAATGCCGTTAGAGTTAGTGGAGATGGTGGGCAATGTGGTTCCAACCCAACACTGGACCCAAGACCACACAGTGTCTCCATTTTGGAGTTTGGTGCAGTTGGAGACGGTAGAACACTCAACACCATTGCGTTCCAGAATGCAGTCTTCTATCTCAAGTCATTTGCCGATAAAGGTGGGGCTCAGCTCTATGTTCCTCCGGGTAAATGGCTCACTGGGAGCTTCAATCTTACCAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGAACTCAGGATCCATCTCATTGGGATGTTATTGAACCCTTGCCTTCTTATGGCCGAGGTCTTGAAGTTCCTGGGGGAAGATATCAGAGCTTGATAAATGGATATATGTTACATGATGTGGTCGTAACAGGTAATAATGGAACCATTGATGGCATGGGGATGGTTTGGTGGGAATGGTATAGCTCCCATTCCTTGAACCACAGCCGACCCCATCTGGTTGAAATTGTGGCATCTGATTATGTGGTGGTTTCAAATCTTACATTCTTGAATGCCCCAGCTTATAGCATACACCCAGTTTATTGCAGCCATGTACATATTCAAAATGTTTCAATCTCTACTCCTCCGGAATCCCCTTATACTGTTGGTATAGTTCCAGATTCTTCTGAATATGTGTGTATAGAAGATTGTATTGTTGCCATGGGATTTGATGCAATTTCTCTTAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCCACTGAGAATGTACACATAAGAAGGGTGTATCTTCATGCATTTTCTGGCTCTGCTCTTGCATTTGGCAGTGATATGTCTGGTGGCATTTCAAATGTTCTAGTGGAGCATGCTCATCTTTTAAACTCAAACAGTGGCATTGAGTTTAGAACCACCAAAGGAAGAGGTGGTTATATGAAAGATATTGCTATATCAGACATACAAATGGAAAATGTCCGCACAGCCATTGCTGCCACTGGTAATTGTGGGTCTCATCCTGATGACAAGTTCGATCCAAATGCGCTCCCACTTTTGGATCACATTACCTTGAGGGAAGTCACAGGTACAAATATTACCATTGCTGGAAACTTTGCTGGAATAGAGGAATCCCCTTTCACAAACATATGCCTTTCCAACATAACATTGTCTACAAATTCTGTTTCTCCCATTACTTGGGAATGCTCAAATGTGTCTGGATTTTCAGACTCAGTGCTCCCAGAACCTTGTCCTGAACTTGGAAACCCCTCATATGATTCTTCCTCGTCCTGTTTCTACCATCTGAGTATCAGTGGAAAAACTGCAGTGCAGTGA 1359 0.4371 MFVALLLLVALSNAVRVSGDGGQCGSNPTLDPRPHSVSILEFGAVGDGRTLNTIAFQNAVFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGTQDPSHWDVIEPLPSYGRGLEVPGGRYQSLINGYMLHDVVVTGNNGTIDGMGMVWWEWYSSHSLNHSRPHLVEIVASDYVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISTPPESPYTVGIVPDSSEYVCIEDCIVAMGFDAISLKSGWDEYGIAYGRPTENVHIRRVYLHAFSGSALAFGSDMSGGISNVLVEHAHLLNSNSGIEFRTTKGRGGYMKDIAISDIQMENVRTAIAATGNCGSHPDDKFDPNALPLLDHITLREVTGTNITIAGNFAGIEESPFTNICLSNITLSTNSVSPITWECSNVSGFSDSVLPEPCPELGNPSYDSSSSCFYHLSISGKTAVQ* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00090 452 Pfam Pectate lyase superfamily protein 37 94 IPR024535 -
Lapu9g00090 452 SUPERFAMILY Pectin lyase-like 32 428 IPR011050 -
Lapu9g00090 452 Pfam Glycosyl hydrolases family 28 135 414 IPR000743 GO:0004650|GO:0005975
Lapu9g00090 452 PANTHER PECTIN LYASE-RELATED 5 439 - -
Lapu9g00090 452 Gene3D - 26 418 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00090 Lapu-Chr9 773371 776538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00090 1 440 Glycoside Hydrolase AT3G16850 63.575 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00090 - - gmx:100777503 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00090 9 773371 776538 Lapu9g00090 9 773371 776538 ECH
Lapu3g00299 3 3022990 3026084 Lapu9g00090 9 773371 776538 PCT