Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00299 ATGCTAGTAGCATTACTCTTACTGCTGTCGCTAAGCAATGAAGTCAGAGTTAATGGTGACGGTGGTAACAGACAGTGTGAGCATAATCCAGCACCAAAAGCAAGACCGCACACTGTCTCCATCTTGGAGTTTGGAGCGGTTGGGGATGGTAAAACATTGAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGTTATATGTGCCACCAGGAACATGGTTGACTAAAAGTTTCAATCTTACTAGTCATCTGACAATCTTCTTGGAAAAAGGTGCTGTCATTCTTGGATCTCAGGATCCATTTCACTGGGAAGTTGTTGATCCATTACCTTCTTACGGTCGAGGAGTTGAAGTTCCCGGGGGAAGATATCAGAGTTTAATAAATGGATACATGTTAGATGATGTGGTGATAACAGGTAATAGTGGAATCATTGATGGCATGGGATTGGCATGGTGGGAATTGTTTAACTCTCATTCCCTGAACTACAGCCGTCCCCATATTATTGAATTAGTGGCATCAGATCATGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCTGCATATAGCATCCACCCAGTTTATAGCAGCAATGTACATATTTACAATGTTTCAATTTCTGCTCCTCCGGAATCCCCTTATACAGTGGGCATAGTACCAGATTCTTCTGATCATATTTGCATAGAGGATTGTGTCATTTCAACGGGCTATGATGCAATTGCCCTCAAAAGTGGCTGGGACGAATATGGCATTGCCTATGGCAGGCCAACTGAGAATGTACACATCAGAAGGGTACATTTGCAAGCTTCTTCTGGCTCTACTATTGCATTTGGCAGCGATATGTCTGGTGGCATTTCAAATATTCTTGTGGAGAATGTTCATCTTTACAACTCAAGGAGTGGCATTGAATTCAGAACCATGAGGGGTAGAGGTGGTTACATGAAGGAAATAGTCATATCAGATATAAAAATGGAGAATATATACACTGCAATGGCTGCCACAGGTTATTGTGGATCTCATCCTGATGACAAATTTGATCCCAATGCTCTTCCACTTTTGGACCACATTATTTTGCAAGATATGATTGGCACAAACATCACTATTGCTGGAAGCTTTGCCGGACTACAAGAATCTCCCTTCACAAACATATGCCTTTCCAATATAAATTTGTCTATAAATTCTGTTTCTTCCATTCCTTGGGAATGTTCAAATATATCTGGATTTTCAGATTCTGTTCTTCCCAAACCCTGTCCTGATCTTGAGACCCTTTCAGACTGTCTCTTCCTTCTGAGTATCAAGGGAAAAACTGCCGACATGTGA 1350 0.4141 MLVALLLLLSLSNEVRVNGDGGNRQCEHNPAPKARPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTKSFNLTSHLTIFLEKGAVILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQSLINGYMLDDVVITGNSGIIDGMGLAWWELFNSHSLNYSRPHIIELVASDHVVVSNLTFLNAPAYSIHPVYSSNVHIYNVSISAPPESPYTVGIVPDSSDHICIEDCVISTGYDAIALKSGWDEYGIAYGRPTENVHIRRVHLQASSGSTIAFGSDMSGGISNILVENVHLYNSRSGIEFRTMRGRGGYMKEIVISDIKMENIYTAMAATGYCGSHPDDKFDPNALPLLDHIILQDMIGTNITIAGSFAGLQESPFTNICLSNINLSINSVSSIPWECSNISGFSDSVLPKPCPDLETLSDCLFLLSIKGKTADM* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00299 449 Pfam Glycosyl hydrolases family 28 135 416 IPR000743 GO:0004650|GO:0005975
Lapu3g00299 449 SMART pbh1 183 205 IPR006626 -
Lapu3g00299 449 SMART pbh1 295 316 IPR006626 -
Lapu3g00299 449 SMART pbh1 233 254 IPR006626 -
Lapu3g00299 449 SMART pbh1 206 232 IPR006626 -
Lapu3g00299 449 SMART pbh1 267 289 IPR006626 -
Lapu3g00299 449 Pfam Pectate lyase superfamily protein 39 95 IPR024535 -
Lapu3g00299 449 SUPERFAMILY Pectin lyase-like 30 429 IPR011050 -
Lapu3g00299 449 Gene3D - 21 419 IPR012334 -
Lapu3g00299 449 PANTHER PECTIN LYASE-RELATED 7 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00299 Lapu-Chr3 3022990 3026084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00299 3 436 Glycoside Hydrolase AT3G06770 61.644 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00299 - - gmx:100802343 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00299 3 3022990 3026084 Lapu3g00299 3 3022990 3026084 ECH
Lapu3g00299 3 3022990 3026084 Lapu9g00090 9 773371 776538 PCT