Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00085 ATGGGAATTGTCACTACTGAAAGCGATCTAGTTTCTGCAGTGGCACCTGAAAGACTATACAAAGCCATTGTCCTTGATTCTAGCAATTTTTTCCCCAAAGCTTTACCAAACTACGTCACGAGTGTTGAAATCATTGAGGGAGATGGAGGGCCAGGAACCATTAAGAAGTTCAGTCTTCCCGAAGGGTATGTGAAGCAAAAGGTGGATATGATCGATGTAGAGAACTATGTGTACCACTACACAATAGTTGAAGGCAATGTTCTGACAGACCCATTGGAGAAGGTGTCTAATGAGTACAAATTGGTGGCAAATCCTGATGGAGGATGCATTGTGAAGGCCACACGCAAATACTACACAAAAGGAGATGCTGAACTCTCAGAAGAGTTTCTGAAGTCTACCAAGGAGATGTCTGCAGTGTTTGCCAAGGCTGTTGATGATTATCTTTTGGCTAATCCTGATTACAACTAA 468 0.4252 MGIVTTESDLVSAVAPERLYKAIVLDSSNFFPKALPNYVTSVEIIEGDGGPGTIKKFSLPEGYVKQKVDMIDVENYVYHYTIVEGNVLTDPLEKVSNEYKLVANPDGGCIVKATRKYYTKGDAELSEEFLKSTKEMSAVFAKAVDDYLLANPDYN* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00085 155 CDD Bet_v1-like 5 148 - -
Lapu9g00085 155 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 85 117 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu9g00085 155 Pfam Pathogenesis-related protein Bet v 1 family 4 151 IPR000916 GO:0006952
Lapu9g00085 155 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu9g00085 155 PRINTS Major pollen allergen Bet V1 signature 106 122 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu9g00085 155 PRINTS Major pollen allergen Bet V1 signature 81 94 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu9g00085 155 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu9g00085 155 PRINTS Major pollen allergen Bet V1 signature 140 150 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu9g00085 155 PRINTS Major pollen allergen Bet V1 signature 62 81 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu9g00085 155 Gene3D - 1 155 IPR023393 -
Lapu9g00085 155 FunFam Major pollen allergen Bet v 1-A 1 155 - -
Lapu9g00085 155 SUPERFAMILY Bet v1-like 3 155 - -
Lapu9g00085 155 PANTHER - 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00085 Lapu-Chr9 752577 753317 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00085 - - gmx:100306363 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00085 9 752577 753317 Lapu9g00085 9 752577 753317 ECH
Lapu3g00310 3 3089963 3090529 Lapu9g00085 9 752577 753317 PCT