Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00310 ATGGCTGTTTTCACTTTCGAGGACCAAACCACTTCTCCCGTTGCTCCTTCAACCCTTTACAAAGCACTTGTCAAAGATGCCGATAACATCATCCCAAAGGCTGTTCATTCCTTCAAGAGTGCTGAAATTGTTGAGGGCAATGGTGGCCCCGGAACCATCAAGAAGATCTCTTTCCTTGAGGATGGAGAGACAAAGTTTGTGTTGCACAAAATAGAAGGAATAGATGAGGCCAACTTGGGATACAGCTACAGCATAGTTGGAGGTGCTGCTTTGCCAGACACTGCAGAGAAGATCACCATCGACTCCAAGCTGAGTGATGGCCCCAACGGAGGATCAGTTGTAAAGCTGAGTATAAAATACCACAGCAAAGGAGATGCTCCACCCAATGAAGACCAGCTCAAAGCTGACAAAGCCAAGAGTGATGTTCTTTTCAAAGCCATCGAGACTTACCTTTTGGCCAATCCTGATTACAAC 474 0.462 MAVFTFEDQTTSPVAPSTLYKALVKDADNIIPKAVHSFKSAEIVEGNGGPGTIKKISFLEDGETKFVLHKIEGIDEANLGYSYSIVGGAALPDTAEKITIDSKLSDGPNGGSVVKLSIKYHSKGDAPPNEDQLKADKAKSDVLFKAIETYLLANPDYN 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00310 158 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu3g00310 158 Gene3D - 1 158 IPR023393 -
Lapu3g00310 158 FunFam Major pollen allergen Bet v 1-A 1 158 - -
Lapu3g00310 158 SUPERFAMILY Bet v1-like 4 158 - -
Lapu3g00310 158 PANTHER - 1 156 - -
Lapu3g00310 158 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu3g00310 158 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu3g00310 158 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu3g00310 158 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu3g00310 158 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu3g00310 158 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu3g00310 158 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lapu3g00310 158 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Lapu3g00310 158 CDD Bet_v1-like 4 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00310 Lapu-Chr3 3089963 3090529 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00310 - - gmx:100527097 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00310 3 3089963 3090529 Lapu3g00310 3 3089963 3090529 ECH
Lapu3g00310 3 3089963 3090529 Lapu9g00085 9 752577 753317 PCT