Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02589 ATGGCCTCTCACTCAAACCAACCAGGAACCGCAGCTGATGGGCAAGGAGAAAAGGACCCCCCACCGCCGATCCCATCAACATCCTTTCAGAATCAGCTTTCTGAGATATCGCCGTCGCCGTCTCCGTCGTCCGCGACGGCGCCGGCGCTGGTGCTGTCAAACTCGGGGAAGCGCATCGACCAGGCGGGGAAGAAGAAGTACGTGAAACAGGTGACGGGGCGGCACAACGACACGGAGCTGCACCTGGCGGCACAGAGGGGTGACGTTGGCGCGGTGAGGCAGATCCTTCTCGACGTCGATTCTCAGATTATGGGAACTCTCGGCGACGGGGACGACGACGATCTCGACACCGAGATTGCGGAGGTGCGCGCTTGCCTCGTCAACGAAGAGAACGAGCTCGGTGAGACCCCTTTGTTCACTGCCGCTGAAAAGGGTCATCTCCATGTCGTCAAGGAACTTCTCAACTATTCCACCGCTCAGACCGTTTCCAAGAAGAACCGATCCGGATTTGATCCCTTGCATATTGCAGCTAGTCAAGGCCACCACCCCATTGTTCAGGTTTTGCTAGATTATGACCCGGGATTGAGCAAAACTATTGGTCCATCCAATTCGACTCCACTTATAACTGCAGCAACAAGAGGACACACGGAAGTGGTGAATGAGCTGCTGTCGAAGGATTGTAGCTTGTTGGAGATTGCTAGATCCAATGGCAAAAATGCATTGCATTTAGCAGCTCGGCAGGGTCATGTGGAGATTGTGAAAGCCTTGCTCAGTAAAGATCCACAGTTGGCTCGGAGAACTGACAAGAAAGGGCAAACTGCATTGCATATGGCTGTAAAAGGGCAGAGTTGTGACGTGGTAAAATTACTTCTTGGTGCGGATGCTGCTATTGTTATGCTTCCTGACAAATTTGGTAACACAGCCTTACATGTGGCAACCAGGAAAAAGCGAGTAGAGATAGTGAATGAGTTGTTAGTTCTGCCAGACACCAATGTTAATGCATTAACCAGAGACCACAAAACAGCTCTTGACATTGCTGAAAGCCTTCCACTCTCAGAAGAGGCGTCAGATATAAAAGAATGTCTTTCTCGATACGGAGCACTTAGAGCTAACGAGCTCAACCAACCAAGGGATGAACTGAGGAAAACTGTTACTCAAATCAAGAAAGATGTTCACACTCAACTTGAACAAACCAAGAGAACCAACAAAAATGTTCATAATATTTCCAAAGAGTTAAGGAAACTCCACAGGGAAGGAATCAACAATGCCACAAACTCAGTAACAGTGGTGGCGGTGTTGTTTGCTACAGTTGCTTTTGCTGCAATATTCACTGTGCCTGGTGGTGATAATAACGATGGCTCAGCAGTGGTAGCAGCTTATTCTGCTTTCAAAATCTTCTTCGTCTTTAATGCTATTGCACTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACCTTGGTTAGAGGTGAAACCAAAGCAGAGAAAAGGGTGGTGGAGGTAATCAACAAGCTCATGTGGCTGGCTTCGGTCTGTACTTCAGTGGCATTTATTGCTTCTTCTTATATAGTTGTTGGTAGGAAGAATAAGTGGGCCGCAATTCTGGTTACTGTAGTTGGAGGGGTGATAATATCTGGAGTTATTGGCACTATGACTTTCTATGTAGTGAGGTCTAAGAGAAGCAGATCAATGAGGAAGAAGGAGAAGCAGCTGGCCAGGAGGAGTGGATCTAACTCATGGCATCATTCTGAATTCTCGAACTCTGAGGTTGATCGGATTTATGCGCTTTGA 1791 0.4779 MASHSNQPGTAADGQGEKDPPPPIPSTSFQNQLSEISPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDVDSQIMGTLGDGDDDDLDTEIAEVRACLVNEENELGETPLFTAAEKGHLHVVKELLNYSTAQTVSKKNRSGFDPLHIAASQGHHPIVQVLLDYDPGLSKTIGPSNSTPLITAATRGHTEVVNELLSKDCSLLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLGADAAIVMLPDKFGNTALHVATRKKRVEIVNELLVLPDTNVNALTRDHKTALDIAESLPLSEEASDIKECLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVAAYSAFKIFFVFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRKNKWAAILVTVVGGVIISGVIGTMTFYVVRSKRSRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAL* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02589 596 Pfam Domain of unknown function 418 524 IPR026961 -
Lapu7g02589 596 ProSiteProfiles Ankyrin repeat profile. 270 302 IPR002110 GO:0005515
Lapu7g02589 596 ProSiteProfiles Ankyrin repeat region circular profile. 133 155 - -
Lapu7g02589 596 ProSiteProfiles Ankyrin repeat region circular profile. 168 190 - -
Lapu7g02589 596 SUPERFAMILY Ankyrin repeat 80 350 IPR036770 -
Lapu7g02589 596 ProSiteProfiles Ankyrin repeat profile. 304 337 IPR002110 GO:0005515
Lapu7g02589 596 Pfam Ankyrin repeats (3 copies) 202 261 IPR002110 GO:0005515
Lapu7g02589 596 Pfam Ankyrin repeats (3 copies) 268 332 IPR002110 GO:0005515
Lapu7g02589 596 Pfam Ankyrin repeats (3 copies) 80 194 IPR002110 GO:0005515
Lapu7g02589 596 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 47 580 - -
Lapu7g02589 596 ProSiteProfiles Ankyrin repeat profile. 168 190 IPR002110 GO:0005515
Lapu7g02589 596 SMART ANK_2a 75 104 IPR002110 GO:0005515
Lapu7g02589 596 SMART ANK_2a 270 299 IPR002110 GO:0005515
Lapu7g02589 596 SMART ANK_2a 236 265 IPR002110 GO:0005515
Lapu7g02589 596 SMART ANK_2a 133 162 IPR002110 GO:0005515
Lapu7g02589 596 SMART ANK_2a 304 334 IPR002110 GO:0005515
Lapu7g02589 596 SMART ANK_2a 202 231 IPR002110 GO:0005515
Lapu7g02589 596 SMART ANK_2a 168 197 IPR002110 GO:0005515
Lapu7g02589 596 ProSiteProfiles Ankyrin repeat region circular profile. 270 297 - -
Lapu7g02589 596 Gene3D - 53 193 IPR036770 -
Lapu7g02589 596 MobiDBLite consensus disorder prediction 28 48 - -
Lapu7g02589 596 FunFam Ankyrin repeat-containing protein ITN1 49 194 - -
Lapu7g02589 596 ProSiteProfiles Ankyrin repeat profile. 133 165 IPR002110 GO:0005515
Lapu7g02589 596 ProSiteProfiles Ankyrin repeat region circular profile. 236 259 - -
Lapu7g02589 596 MobiDBLite consensus disorder prediction 1 48 - -
Lapu7g02589 596 ProSiteProfiles Ankyrin repeat profile. 236 268 IPR002110 GO:0005515
Lapu7g02589 596 FunFam Ankyrin repeat-containing protein ITN1 isoform A 195 394 - -
Lapu7g02589 596 Gene3D - 198 392 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02589 Lapu-Chr7 42107048 42111299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02589 24 596 Miscellaneous Gene Families AT3G12360 80.139 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02589 - - pvu:PHAVU_007G008900g 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00458 6 4788138 4792020 Lapu7g02589 7 42107048 42111299 ECH
Lapu7g02589 7 42107048 42111299 Lapu7g02589 7 42107048 42111299 ECH