Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00458 ATGATGAAGAAACAATTGACAGGTATACGGGGTGATTCTCCACTACAATCTGCAATCCGAGCTGGAAATATAGAATTGGTTCGGGAAATCATCTCTCAGAGTCCAGAGGGAGAATTAAAGGAGCTTCTTTCAAAGAGAAACAACTCGTGTGAAACTGCCTTATATGTTGCGGCTGAAAATGGTCATCTTGATACAGTGAAGGAATTGATTAAATACCATGATATAGGGTTGGCCGGCTTCAAAGCTCGAAATGGATTCGATGCATTCCACATCGCTGCTAAGAATGGACACTTGGAGATATTGAAGGTCCTCATGGAGTTCATTCCTGAAATTTCAATGACTGTTGATATGTCAAACACTACTGCGTTGCATACTGCTGCGGCACAAGGACATATTGAAGTAGTGAATTTTCTCTTGGAAAAAGGTAGCAGCTTGGTAACTATCGCGAAAAGCAATGGGAAAACTGTGCTGCATTCTGCAGCAAGAAATGGTCATTTAGAGATAGTCAAGGCCCTTCTGAACAAAGAACCTGAAATTGCAGTGAGAATTGACAAGAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAGAATCTTGAGCTGGTGGATGAGCTTTTGAAACTTAGTCCATCTTTGGCTAATATGATGGACGCCAAGGGAAACACTGCACTGCATATAGCAACCCGGAAGGGTCGTCTACAGGTTGTTCAGAAGCTACTAGATTGCAGAGAAATAGACACAGATGTTATTAACAAATCAGGAGAAACTGCCTTAGATACTGCAGAGAAAAATGGTCGGTTGGAAATCTCCAACTTTCTGCAACACCGTGGAGCTCAAAGTGCCAAGTCCATGAAGTCACCTACTGCAAACACAGCCCTTGAGCTCAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACTTTTAAAACACAGAGACGTATGCAAGGTATAGCGAAGCGAATTAACAAAATGCACACTGAGGGACTTAACAATGCCATCAACTCCAACACTGTCGTTGCTGTTCTAATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCTGAGCAACAAGATAAACTCTCTCCTATAATGTCTCCTGGGGAAGCATATATTGCTCCCGATATTGGATTCAAGATATTCATAATCTTTGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGATTGTCCAAACATCCGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTTATAAATAAGTTGATGTGGGTAGCTTGTGTGCTAATTTCTGTGGCGTTTATTGCAATGTCATACATAATTGTTGGAGATCATAAAGAGTTGGCTATAGCAGCCACAGCTCTAGGGACAGTGATTATGGCAGCTACTTTAGGAACACTCTGTTATTGGGTGATTGCTCACCGCCTTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGCAGTAGGCAGTCAATGTCTATGTCAATGATGTCAGGATCGGAGAATGAGTACAAGACCGTTTACGCCATATAA 1566 0.424 MMKKQLTGIRGDSPLQSAIRAGNIELVREIISQSPEGELKELLSKRNNSCETALYVAAENGHLDTVKELIKYHDIGLAGFKARNGFDAFHIAAKNGHLEILKVLMEFIPEISMTVDMSNTTALHTAAAQGHIEVVNFLLEKGSSLVTIAKSNGKTVLHSAARNGHLEIVKALLNKEPEIAVRIDKKGQTALHMAVKGQNLELVDELLKLSPSLANMMDAKGNTALHIATRKGRLQVVQKLLDCREIDTDVINKSGETALDTAEKNGRLEISNFLQHRGAQSAKSMKSPTANTALELKRTVSDIKSGVHNQLEHTFKTQRRMQGIAKRINKMHTEGLNNAINSNTVVAVLIATVAFAAIFNVPGQYPEQQDKLSPIMSPGEAYIAPDIGFKIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVACVLISVAFIAMSYIIVGDHKELAIAATALGTVIMAATLGTLCYWVIAHRLEASRLRSLRTTMSSRQSMSMSMMSGSENEYKTVYAI* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00458 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Lapu6g00458 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
Lapu6g00458 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Lapu6g00458 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10 505 - -
Lapu6g00458 521 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Lapu6g00458 521 ProSiteProfiles Ankyrin repeat profile. 84 106 IPR002110 GO:0005515
Lapu6g00458 521 ProSiteProfiles Ankyrin repeat region circular profile. 186 208 - -
Lapu6g00458 521 Pfam Ankyrin repeats (many copies) 218 262 IPR002110 GO:0005515
Lapu6g00458 521 Gene3D - 110 178 IPR036770 -
Lapu6g00458 521 Gene3D - 179 279 IPR036770 -
Lapu6g00458 521 Gene3D - 2 109 IPR036770 -
Lapu6g00458 521 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Lapu6g00458 521 SMART ANK_2a 254 283 IPR002110 GO:0005515
Lapu6g00458 521 SMART ANK_2a 118 148 IPR002110 GO:0005515
Lapu6g00458 521 SMART ANK_2a 186 215 IPR002110 GO:0005515
Lapu6g00458 521 SMART ANK_2a 49 77 IPR002110 GO:0005515
Lapu6g00458 521 SMART ANK_2a 84 113 IPR002110 GO:0005515
Lapu6g00458 521 SMART ANK_2a 10 41 IPR002110 GO:0005515
Lapu6g00458 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Lapu6g00458 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Lapu6g00458 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Lapu6g00458 521 Pfam Ankyrin repeats (3 copies) 152 208 IPR002110 GO:0005515
Lapu6g00458 521 Pfam Ankyrin repeats (3 copies) 81 145 IPR002110 GO:0005515
Lapu6g00458 521 Pfam Ankyrin repeats (3 copies) 10 75 IPR002110 GO:0005515
Lapu6g00458 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Lapu6g00458 521 Pfam Domain of unknown function 334 449 IPR026961 -
Lapu6g00458 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Lapu6g00458 521 ProSiteProfiles Ankyrin repeat profile. 186 208 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00458 Lapu-Chr6 4788138 4792020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00458 2 521 Miscellaneous Gene Families AT1G07710 63.308 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00458 - - gmx:100787392 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00458 6 4788138 4792020 Lapu7g02589 7 42107048 42111299 ECH
Lapu6g00458 6 4788138 4792020 Lapu6g00458 6 4788138 4792020 ECH