Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01097 ATGCCGTGTTGCATTCCCACGCTGGTGGCTGTGATCATCGCCGTGCTGGTGTCGGCGGTGCACGGCGCTTTCCTCCCCCTGGAGCGGAGCATTCCTCTGAGCCACCACGCGGAGGTGGCTGCGCTGAGGGCTCACGACAGAGCCCGCCACGCCCGAATGTTGAGCGGCATAGTCGACTTAACAGTCCAAGGAACCTCCGATCCAAACTCCGTTGGGTACGGGTTGTATTATACCAAAGTGAAGATGGGAACACCTCCTAAAGAATTTAACGTTCAGATTGATACGGGGAGTGATATATTGTGGGTGAATTGCAATACTTGCAGTAATTGTCCTCAGTCTAGTGAACTAGGGATTGAGCTTAATTTCTTTGACACGGTTGGGTCGTCCACCGCTGCGTTGGTTCCCTGCTCGGACCCGATATGCACTTCTGGGGTTCAAGGAGCTTCTGCCGAGTGCTCCACGAGGGTTAATCAATGCAGCTACGCCTTTAAGTATGGAGATGGGAGTGGGACTTCAGGTTATTATGTTTCGGATGCATTGTATTTTGATTTGATCGTGGGACAGCCTCCACTTCCACCGGTTAACTCTTCGGCTACCATTGTTTTTGGGTGTAGCAACTATCAGTCTGGAGATCTGACCAAGACAGATAAAGCAGTCGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTGTATCACAGTTGTCATCACGAGGAATAACACCCAAAGTCTTCTCTCATTGCTTAAAAGGAGATGGCAATGGAGGAGGCATTCTAGTTCTTGGCGAGATAAAGGACTCAAGTATTGTTTATAGTCCACTTGTTCCGTCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCTGTCAATGGGCAACTACTCCCTATTAATCCAGCTGTATTTGCAACATCTAATGATCGAGGAACTATAGTTGACTGTGGTACAACATTGGCATATCTTGTTCAAGAAGCTTATGATCCTCTTGTCACTGCAATAACTAGTGCTGTGTCACAATCTGCTCGGCAAACTAATTCCAAAGGAAGCCAGTGTTATCTGGTCTCAACCAGTATAGGTGACATTTTTCCTTCGGTCAGTTTAAATTTTGAGGGTGGAGCGTCAATGATTTTAAAACCAGAGCAGTACCTTATGCATAATGGTTACCATGATGGTGCTGAAATGTGGTGCATCGGTTTCCAGAATGTACAGGAGGGAACCTCAATTTTAGGAGATCTTGTCCTAAAAGATAAGATAGTTGTGTATGACTTGGCACATCAACGAATTGGATGGACTAACTACGACTGTTCTTTGTCTGTAAATGTTTCTGTGACTACGAGCAAGGATGAATACATCAATGGGGGACAGCTAAGTGTCAGCAGCTCCGCAAAACGCGTTCTTTCTAATTTACTAACCGTAAGCATTGTTGCTCTCTCTTTGTACATAATGTTGGTATGA 1458 0.4595 MPCCIPTLVAVIIAVLVSAVHGAFLPLERSIPLSHHAEVAALRAHDRARHARMLSGIVDLTVQGTSDPNSVGYGLYYTKVKMGTPPKEFNVQIDTGSDILWVNCNTCSNCPQSSELGIELNFFDTVGSSTAALVPCSDPICTSGVQGASAECSTRVNQCSYAFKYGDGSGTSGYYVSDALYFDLIVGQPPLPPVNSSATIVFGCSNYQSGDLTKTDKAVDGIFGFGPGALSVVSQLSSRGITPKVFSHCLKGDGNGGGILVLGEIKDSSIVYSPLVPSQPHYNLNLQSIAVNGQLLPINPAVFATSNDRGTIVDCGTTLAYLVQEAYDPLVTAITSAVSQSARQTNSKGSQCYLVSTSIGDIFPSVSLNFEGGASMILKPEQYLMHNGYHDGAEMWCIGFQNVQEGTSILGDLVLKDKIVVYDLAHQRIGWTNYDCSLSVNVSVTTSKDEYINGGQLSVSSSAKRVLSNLLTVSIVALSLYIMLV* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01097 485 PANTHER ASPARTYL PROTEASES 14 430 IPR001461 GO:0004190|GO:0006508
Lapu7g01097 485 FunFam Aspartic proteinase-like protein 2 57 264 - -
Lapu7g01097 485 ProSiteProfiles Peptidase family A1 domain profile. 76 432 IPR033121 -
Lapu7g01097 485 FunFam Aspartic proteinase-like protein 2 265 443 - -
Lapu7g01097 485 Gene3D Acid Proteases 265 443 IPR021109 -
Lapu7g01097 485 Pfam Xylanase inhibitor N-terminal 76 263 IPR032861 -
Lapu7g01097 485 Pfam Xylanase inhibitor C-terminal 281 432 IPR032799 -
Lapu7g01097 485 SUPERFAMILY Acid proteases 71 439 IPR021109 -
Lapu7g01097 485 CDD pepsin_A_like_plant 76 436 IPR034161 -
Lapu7g01097 485 Gene3D Acid Proteases 59 264 IPR021109 -
Lapu7g01097 485 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190|GO:0006508
Lapu7g01097 485 PRINTS Pepsin (A1) aspartic protease family signature 311 322 IPR001461 GO:0004190|GO:0006508
Lapu7g01097 485 PRINTS Pepsin (A1) aspartic protease family signature 82 102 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01097 Lapu-Chr7 22072144 22077140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01097 69 437 Miscellaneous Gene Families AT1G44130 27.621 2.26e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01097 - - gmx:100820394 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01097 7 22072144 22077140 Lapu7g01097 7 22072144 22077140 ECH
Lapu6g00577 6 6017343 6024003 Lapu7g01097 7 22072144 22077140 PCT