Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00577 ATGCGGGCCTGCGTTCCCCTGTCGCTCGCATTAGCCGCCGTCTCGTTGGCGGCGGCGCTGGTGCACGGTGGTTTGACGGGGTCATTTCTTCCTCTGGAACGGGCAATTCCTTTGAACCAACGAGTGGAGTTAGAGGCGTTGAGAGCTCGCGACAGAGCACGCCACGGTCGAATCTTGCAAGGTGTCTTTGGTGGCGTTGTTGACTTCGCCGTCCAAGGAACCTCCGATCCTTACTTCGTTGGGTACGGGCTGTATTTCACGAAAGTGAAGTTGGGATCTCCCGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATATTGTGGCTGAATTGCATGACTTGCAGTAATTGCCCGCAATCTAGTGGGTTAGGTATTGAGCTGGATTTCTTTGACACGGCCGGCTCATCCACTGCTGCGTTTGTTTCCTGTGCTGATCCAATATGTTCTTATGCGGTTCAAACTGCGACAAGTGAATGCTCTTCTCAGGCTAATCATTGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACAACTGGTTATTATGTTTCTGATACCATGTATTTTGACACAGTCCTGGGACAGTCATTGGTTTCTAACTCTTCATCTACCATCGTTTTTGGGTGTAGCACCTACCAGTCTGGGGATTTGACCAAAACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTATATCACAATTGTCATCACGGGGCGTTACACCCAAAGTGTTCTCTCATTGCCTAAAAGGACAAGACAATGGAGGAGGTGTGTTAGTTGTCGGTCAAATTTTGGAGCCAAATATTGTTTATAGCCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTTAATGGACAACTTCTCCCTATTGATTCAGATGTATTTGCGACAACTACTACTCGAGGAACTATAGTTGATACTGGCACAACATTGGCATACCTTGTTCAAGAAGCATACAATCCTTTTGTCGATGCTATAACTGCTGCCGTGTCACAGTTCTCCAAGCCCATCATTTCAAAAGGAAACCAGTGTTATCTAGTGTCAAACAGTGTAGGTGATATATTTCCTCAAGTCAGTTTAAACTTCATGGGTGGGGCATCTATGGTTTTAGATCCAGAACATTACCTCATGCACTATGGTTTCCTTGATGGTGCTGCAATGTGGTGCATTGGTTTCCAAAAAGTGGATCACGGATTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTGTATGACTTAGCTAATCAACGAATTGGATGGGCCAATTATGATTGTTCCTTGGCTGTAAACGTCTCTATGGCTACGAGCAAGAGCAAGGATGCATACATCAACAATTCAGGACACATGAGCGTGGGCTGCTCCCTCATAGGCACTCTCTCCAAGTTGTTAGCCGTAGGCATTGCCGCTTTCCTTGTGCACATATTTTTCATGGGGTTCCTATTTTTGTAA 1503 0.4538 MRACVPLSLALAAVSLAAALVHGGLTGSFLPLERAIPLNQRVELEALRARDRARHGRILQGVFGGVVDFAVQGTSDPYFVGYGLYFTKVKLGSPAKEFYVQIDTGSDILWLNCMTCSNCPQSSGLGIELDFFDTAGSSTAAFVSCADPICSYAVQTATSECSSQANHCSYTFQYGDGSGTTGYYVSDTMYFDTVLGQSLVSNSSSTIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSRGVTPKVFSHCLKGQDNGGGVLVVGQILEPNIVYSPLVPSQPHYNLNLQSIAVNGQLLPIDSDVFATTTTRGTIVDTGTTLAYLVQEAYNPFVDAITAAVSQFSKPIISKGNQCYLVSNSVGDIFPQVSLNFMGGASMVLDPEHYLMHYGFLDGAAMWCIGFQKVDHGFTILGDLVLKDKIFVYDLANQRIGWANYDCSLAVNVSMATSKSKDAYINNSGHMSVGCSLIGTLSKLLAVGIAAFLVHIFFMGFLFL* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00577 500 Pfam Xylanase inhibitor C-terminal 288 439 IPR032799 -
Lapu6g00577 500 CDD pepsin_A_like_plant 85 443 IPR034161 -
Lapu6g00577 500 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Lapu6g00577 500 PRINTS Pepsin (A1) aspartic protease family signature 318 329 IPR001461 GO:0004190|GO:0006508
Lapu6g00577 500 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Lapu6g00577 500 FunFam Aspartic proteinase-like protein 2 272 450 - -
Lapu6g00577 500 FunFam Aspartic proteinase-like protein 2 66 271 - -
Lapu6g00577 500 Gene3D Acid Proteases 68 271 IPR021109 -
Lapu6g00577 500 Gene3D Acid Proteases 272 449 IPR021109 -
Lapu6g00577 500 PANTHER ASPARTYL PROTEASES 25 437 IPR001461 GO:0004190|GO:0006508
Lapu6g00577 500 SUPERFAMILY Acid proteases 80 445 IPR021109 -
Lapu6g00577 500 ProSiteProfiles Peptidase family A1 domain profile. 85 439 IPR033121 -
Lapu6g00577 500 Pfam Xylanase inhibitor N-terminal 85 270 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00577 Lapu-Chr6 6017343 6024003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00577 83 444 Miscellaneous Gene Families AT1G44130 27.202 1.79e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00577 - - gmx:100804147 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00577 6 6017343 6024003 Lapu6g00577 6 6017343 6024003 ECH
Lapu6g00577 6 6017343 6024003 Lapu7g01097 7 22072144 22077140 PCT