Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00506 ATGAAGAGACTTTCAACTTTGGTGAGTGTGTTTCTGGTTCTTGCATTGTTCAGTTGTAGCCCATGGGCAGTGTGGAGCAGCTCGTACTGCAATCGGATAAACTTGAAGGAAGTCCGGCCTCACAGTGTCAGTATTACCGAATTTGGGGCAGTTGGCGATGGGATCACTCTCAATACAAAAGCATTTCAGAATGCCATCTTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCCAAGCTTTTTGTCCCCGCCGGCCGGTGGTTAACTGGAAGCTTTGATCTCATCAGTCATCTAACACTGTGGTTGGACAACGATGCAGTAATTCTTGGATCAACGAACTCCGACGATTGGCCAGTTGTGGAGCCTCTACCATCATATGGTCGTGGAAGGGAGTTGCCGGGTGGAAGGCATAGAAGCCTCATTTATGGGCATAATTTGACTGATGTTGTCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGGACAAGTTTCGGAACAAAACATTGGATTATACACGTCCTCATTTGGTCGAGTTGATGAATTCAACCGGGGTTCTCATTTCAAATGTAACTTTCTTGAACTCACCATTTTGGACTATTCACCCTGTATATTGCAGCCATGTAACAATTCATAATGTCACAGTCATTGCTCCTCACGGTTCACCAAATACAGATGGCATTAATCCAGATTCTTCAGACAATGTATGCATTCAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATCAAAAGTGGATGGGATGGATATGGCATTTCATTTGGTCGACCCAGTACAAATATTAACATCCGCAGGCTCATTGGGAAAACAACGAGTGCTGGGATTGCTATCGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTTCATGCAGAAGATATTTACATTTTTGATTCACATAGTGCAATTAGAATAAAAACATCTCCTGGCAGGGGTGGTTATGTTAGAAACGTCTATATCTCTAACATGATATTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCTGATGACAATTATGACCCAGATGCTCTACCAGTAATTGAAAGGATTACTATCAAGGATGTGATTGGGGAAAAAGTCAAACGTGCTGGCCTTATACAGGGTATTAAAGGTGACAACTTTGTCAATATCTGCCTATCAAACATAACACTTAATGTGACCTCAAAATTGCCATGGAACTGCTCTTACGTTAAAGGATATTCTGACCTGGTTTCACCGGAAGTCTGTGAGCCTCTCAATGAGCGAATATCCCCTGAGCATTGTTCCGACTGTTGCTATTTACCGAACCACTTGACGAGTTTGGGAAATCAGAACTGGGGTGCTTGGGTTTAG 1389 0.4248 MKRLSTLVSVFLVLALFSCSPWAVWSSSYCNRINLKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDNDAVILGSTNSDDWPVVEPLPSYGRGRELPGGRHRSLIYGHNLTDVVITGNNGTIDGQGSIWWDKFRNKTLDYTRPHLVELMNSTGVLISNVTFLNSPFWTIHPVYCSHVTIHNVTVIAPHGSPNTDGINPDSSDNVCIQDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYIFDSHSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDNYDPDALPVIERITIKDVIGEKVKRAGLIQGIKGDNFVNICLSNITLNVTSKLPWNCSYVKGYSDLVSPEVCEPLNERISPEHCSDCCYLPNHLTSLGNQNWGAWV* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00506 462 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lapu7g00506 462 PANTHER PECTIN LYASE-RELATED 15 442 - -
Lapu7g00506 462 SMART pbh1 237 269 IPR006626 -
Lapu7g00506 462 SMART pbh1 210 236 IPR006626 -
Lapu7g00506 462 SMART pbh1 271 292 IPR006626 -
Lapu7g00506 462 SMART pbh1 298 319 IPR006626 -
Lapu7g00506 462 SMART pbh1 327 348 IPR006626 -
Lapu7g00506 462 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Lapu7g00506 462 Gene3D - 24 418 IPR012334 -
Lapu7g00506 462 SUPERFAMILY Pectin lyase-like 36 430 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00506 Lapu-Chr7 5713445 5717633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00506 1 443 Glycoside Hydrolase AT3G62110 69.111 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00506 - - gmx:100786985 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00506 7 5713445 5717633 Lapu7g00506 7 5713445 5717633 ECH
Lapu6g00917 6 9328369 9332264 Lapu7g00506 7 5713445 5717633 PCT