Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00917 ATGAGAAGACCTTCAACACTCGAGGAAGTGCTTCTGGTACTTGCATTGCTCAGTTGTAGCCCATGGATGGTATGGAGCAAGACACTTTGCCAACAGACAAACGACGATGTTCGACCTCACAGCGTCAGCATCACCGAATTTGGTGCAGTTGGCGATGGGGTCACTCTCAACACAAAAGCATTTCAAAATGCCATCTTCTACCTGAATTCCTTTGCTGACAAAGGTGGAGCCAAGCTTTTTGTCCCAGCTGGTCGGTGGTTAACCGGTAGTTTTGATCTCATCAGTCATCTAACTTTGTGGTTGGACAAAGATGCAGTAATTATTGGATCAACGGACCCTAAAGATTGGCCAGTGGTTGATCCTCTACCCTCGTATGGAAGAGGAAGAGAGTTGCCAGGTAGAAGGCACAAGAGCCTCGTTTATGGGCGCAATTTGACTGATGTGATCATAACAGGTAATAATGGAACTATTGATGGTCAAGGGAGTATCTGGTGGAGCATGTTTAGGAACAAAACTCTGGATTATACGCGTCCCCATTTGATAGAATTGATGAATTCAACAGGGATTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACAGTTCATCCAGTGTATTGCAGCCATGTTACAGTTCAGAAAGTGGCCATCTTTGCCCCTCTTGATTCTCCAAATACTGATGGGATCGATCCAGATTCTTCTGACAATATATGCATTGAAGACTGTTACATAAGCACGGGTGATGATCTGATTGCCATCAAGAGCGGATGGGATGAGTATGGCATTGCATACGGTCGTCCCTGCACAAACATTATCATCCACAGGCTTGTTGGTAAAACTCAAACAAGTGCAGGAATTGCAATAGGAAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATGTAGAAGACATTCAATTCTACGATTCGTACACTGCAATCAGGATAAAGACTTCTCCTGGAAGGGGTGGTTATGTTAGAAACATCTATGTTTCCAACGTGACCTTGACTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCAGATGATGCATATGATCCAAATGCTCTACCTGTAATAGAAAATATTACAATCAAGGATGTGGTGGGAGAGAATATCAAAACTGCTGGTCTTATAGAGGGTATAGAAGGTGACAATTTCGTCAACATTTGCCTATCTAACATTGTCCTCAATGTGAGCTCAAATTATCCATGGAACTGCTCCTATGTTAAAGGATATTCTGACTTGGTTTTGCCAGAAGCTTGTGAGCCTCTCAAAGAAAGAATATTCCCAGAGCATTGTTCAGATTGTTACTATATGTCAAATCAAATTCAGAGTTCAAAAGGTCAAAATAGAGGTGCTTGGTTTATGTCTTGGTAA 1398 0.4177 MRRPSTLEEVLLVLALLSCSPWMVWSKTLCQQTNDDVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVIIGSTDPKDWPVVDPLPSYGRGRELPGRRHKSLVYGRNLTDVIITGNNGTIDGQGSIWWSMFRNKTLDYTRPHLIELMNSTGILISNLTFLNSPFWTVHPVYCSHVTVQKVAIFAPLDSPNTDGIDPDSSDNICIEDCYISTGDDLIAIKSGWDEYGIAYGRPCTNIIIHRLVGKTQTSAGIAIGSEMSGGVSEVHVEDIQFYDSYTAIRIKTSPGRGGYVRNIYVSNVTLTNVDIAIRFTGLYGEHPDDAYDPNALPVIENITIKDVVGENIKTAGLIEGIEGDNFVNICLSNIVLNVSSNYPWNCSYVKGYSDLVLPEACEPLKERIFPEHCSDCYYMSNQIQSSKGQNRGAWFMSW* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00917 465 PANTHER PECTIN LYASE-RELATED 22 451 - -
Lapu6g00917 465 SUPERFAMILY Pectin lyase-like 35 431 IPR011050 -
Lapu6g00917 465 Gene3D - 24 418 IPR012334 -
Lapu6g00917 465 SMART pbh1 361 383 IPR006626 -
Lapu6g00917 465 SMART pbh1 209 235 IPR006626 -
Lapu6g00917 465 SMART pbh1 298 319 IPR006626 -
Lapu6g00917 465 SMART pbh1 236 268 IPR006626 -
Lapu6g00917 465 SMART pbh1 270 292 IPR006626 -
Lapu6g00917 465 SMART pbh1 327 348 IPR006626 -
Lapu6g00917 465 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00917 Lapu-Chr6 9328369 9332264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00917 1 465 Glycoside Hydrolase AT3G62110 66.808 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00917 - - gmx:100782602 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00917 6 9328369 9332264 Lapu7g00506 7 5713445 5717633 PCT