Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00479 ATGGCTAACCTTACTATGAAGCTGCCCAACTTGGTTCTCCTACTGACTTTGGCTCTTCTCTCAGCCACCGCCATCTCATCTGATCCTGACCTTCTTCAAGACCTCTGTGTCGCTGACCTTGCCTCAGGTGTGAGGGTGAATGGATTCACCTGCAAAGAAGCATCTAAGGTAAATGCCTCAGATTTCTTTTCCAACATGCTGTCCAAACCAGGAGACACCAACAACACCTTTGGCTCATTGGTGACTGGAGCCAATGTGGTGAGAATCCCAGGACTGAACACACTTGGTGTCTCTCTGTCAAGGATTGACTATGCCCCAGATGGCATCAACCCTCCTCACACTCACCCTCGTGCCACTGAGATTGTGTTTGTGCTTGAAGGGCAACTAGATGTAGGGTTCATAACCACTGCCAATGTGCTCATATCAAAGACCATTAGCAAGGGTGAAATATTTGTGTTCCCAAAAGGCTTGGTTCACTTCCAAAAGAACAATGCCAATGTCCCTGCTGCGGTCATTTCAGCTTTCAATAGCCAACTTCCAGGGACACAGTCCATTGCTACAACCTTGTTTGCTTCCACACCATCACTTCCTGACCATGTCTTGACCAAGACCTTCCAGGTTGGAACCAAGCAGGTTCAGAAAATCAAGTCCAGGCTTGCACCTAAAAAGTAA 672 0.4762 MANLTMKLPNLVLLLTLALLSATAISSDPDLLQDLCVADLASGVRVNGFTCKEASKVNASDFFSNMLSKPGDTNNTFGSLVTGANVVRIPGLNTLGVSLSRIDYAPDGINPPHTHPRATEIVFVLEGQLDVGFITTANVLISKTISKGEIFVFPKGLVHFQKNNANVPAAVISAFNSQLPGTQSIATTLFASTPSLPDHVLTKTFQVGTKQVQKIKSRLAPKK* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00479 223 FunFam germin-like protein subfamily 2 member 1 27 221 - -
Lapu7g00479 223 SUPERFAMILY RmlC-like cupins 28 218 IPR011051 -
Lapu7g00479 223 Gene3D Jelly Rolls 27 221 IPR014710 -
Lapu7g00479 223 SMART Cupin_1_3 64 213 IPR006045 -
Lapu7g00479 223 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 21 217 - -
Lapu7g00479 223 CDD cupin_OxOx 28 219 IPR001929 GO:0030145
Lapu7g00479 223 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
Lapu7g00479 223 Pfam Cupin 67 213 IPR006045 -
Lapu7g00479 223 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Lapu7g00479 223 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Lapu7g00479 223 PRINTS Germin signature 113 133 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00479 Lapu-Chr7 5484378 5486427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00479 13 223 Miscellaneous Gene Families AT3G05930 53.302 1.79e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00479 - - gmx:100791828 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00944 6 9619803 9621637 Lapu7g00479 7 5484378 5486427 PCT