Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00944 ATGAAGCTCCCACCCTTCCTTCCACTCTTGACTTTTGCTTTGGTGTTAACCACCATCTCTGCATCAGATCCTGATCCTCTTCAAGACCTCTGTGTCGCTGACCTTGCCTCAGCTGTTAAAGTGAATGGATTCACCTGCAAAGATGCTTCCAAGGTAAATGCCTCTGATTTCTTCTCAGACATACTAGCCAAACCAGGTGCCACAAACAACACCTATGGCTCCTTGGTGACTGGAGCCAATGTTCAGAAAATCCCTGGACTCAACACCCTTGGTGTATCTCTGTCAAGAGTTGACTATGCTCCAGGTGGCATCAACCCTCCCCACACTCACCCACGTGCCACCGAGATTGTGTTTTTGCTGGAAGGAACACTCGATGTGGGTTTCATAACCACAGCCAATGTGCTCATATCAAAGACCATCCACAAGGGTGAGATTTTTGTGTTCCCAAAAGGCTTAGTTCACTTCCAAAAGAACAATGCAAAGGAACCTGCTTCAGCCCTTGCAGCCTTCAACAGTCAACTACCTGGTACACAGTCCATTGCTCTCACCTTGTTTGCAGCCACACCACCTGTTCCAGACAATGTGTTGACCCAGGCATTCCAGGTTGGTACCAAGGAGGTTCAGAAAATCAAGTCTAAGCTTGCACCTAAGAAATAA 657 0.4749 MKLPPFLPLLTFALVLTTISASDPDPLQDLCVADLASAVKVNGFTCKDASKVNASDFFSDILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRVDYAPGGINPPHTHPRATEIVFLLEGTLDVGFITTANVLISKTIHKGEIFVFPKGLVHFQKNNAKEPASALAAFNSQLPGTQSIALTLFAATPPVPDNVLTQAFQVGTKEVQKIKSKLAPKK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00944 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 19 213 - -
Lapu6g00944 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Lapu6g00944 218 Gene3D Jelly Rolls 22 216 IPR014710 -
Lapu6g00944 218 FunFam germin-like protein subfamily 2 member 1 22 216 - -
Lapu6g00944 218 Pfam Cupin 62 208 IPR006045 -
Lapu6g00944 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Lapu6g00944 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Lapu6g00944 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Lapu6g00944 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Lapu6g00944 218 SMART Cupin_1_3 59 208 IPR006045 -
Lapu6g00944 218 CDD cupin_OxOx 23 214 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00944 Lapu-Chr6 9619803 9621637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00944 9 218 Miscellaneous Gene Families AT3G05930 56.872 1.18e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00944 - - gmx:100302722 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00944 6 9619803 9621637 Lapu7g00479 7 5484378 5486427 PCT