Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00180 ATGCTGAGCGTGGTGCGCGTGCACCTGCCCTCGGAAATTCCCATTGTAGGCTGCGAACTCACCCCCTACGTCCTCCTTCGCCGCCCTGACAAGAGCGTATCCACCGATGATGTTCCCGAAACCGCCCCCTTAGATGGCCATTTCCTCCATTACAAATGGTATCGTGTACAGAGTGATAAAAAAGTTGCTGTCTGTAGCATACATCCATCAGAACAAGCCACACTGCAATGCCTAGGTTGTGTTAAGGCCAAAATTCCTCTTTCCAAGAGTTACCATTGCACCACAAAATGTTTTTCAGATGCATGGCAGCATCACCGTGTCTTACATGATCGTGCTGCAAGTGCTCTTAATGAAAATGGAAATGAGGAGGAAGAGGTATTTGGGCGCTTTAATAGTACTGGATCTGGGGCAATCAATTCCAGCTTATCTGCTTCTGCTTCAAGTGCTAGCTTGACTAATGGATCTGCAACACCTTTGTATCCTGCTGCTGTCACACAAAGAAGTGGTGAAACTTGGTTTGAAGTTGGACGATCTAAGACTTATACCCCTACTGCTGATGATGTTGGTCATGTCCTTAAGTTTGAGTGTGTTGTAGTTGATGCAGAGACAAAACTGCCTGTGGGGCCTGTTAACACTATACTAACGTCACGTGTCATTCCTGCTCCCTCACCTATTCCCCGCCGGCAGATACGTGTTGATGGAATGGGGCATTTAGATGTGGATGGTAGAATGTCAACTTCAGGAACTTTTACTGTTCTATCCTACAATATATTGTCTGAAGCATATGCCTCAAATGATCTGTACAATTACTGCCCTTCCTGGGCACTTTCTTGGCCATACCGCAGGCAAAATTTGTTAAGAGAAATTGTTGGTTACCGGGCAGACATTATTTGTCTTCAGGAGGTTCAAAGCGATCATTATGATGAATTTTTTTCTCCTGAACTGGACAAACATGGATATTATGGTCTTTACAAGAGAAAAACAAATGAGGTGTACAGTAGCAACACAAATACAATTGATGGTTGTGCAACATTTTTCCGCAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGAATTTAACAAGGCTGCACAGTCTTTGACAGAGGCTACAATTCCAACCACTCAGAAGAAAAGTGCCTTGAATCGACTGGTTAAGGATAATGTTGCATTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCATTTGATAATCCTGGGAAAAGACAGCTTCTTTGTGTGGCAAATACACATGTGAATGTCCCCCAAGATTTAAAGGATGTGAAACTCTGGCAGGTTCATACTCTCTTAAAAGGGTTGGAGAAAATAGCTGCAAGCGCAGACATTCCCATGTTGGTTTGTGGAGATTTTAATTCAGTTCCGGGAAGTGCTCCTCATGCACTTCTAGCAATGGGGAAGGTAGATCCTTCACATCCTGATTTAGCAGTTGACCCACTTAACATTTTACGTCCTCACAGCAAGTTGGTTCATCAGTTACCACTGGTCAGTGCGTACTCATCTTTTGCGAGAACAGTTAGCCTTGGATATGATCAGCATAAAAGGAGACTGGATGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGCGGATTCTTTGGTTGTGGAGTCATTGTTGGAGTTACTGGATGAGGAGAGTTTGAGGAAGGACACTGCACTTCCTTCACCTGAATGGTCCTCAGATCACATAGCTCTCTTAGCTGAGTTCCGCTGCTGCAAGAATAAATCTAGGCGTTGA 1803 0.4332 MLSVVRVHLPSEIPIVGCELTPYVLLRRPDKSVSTDDVPETAPLDGHFLHYKWYRVQSDKKVAVCSIHPSEQATLQCLGCVKAKIPLSKSYHCTTKCFSDAWQHHRVLHDRAASALNENGNEEEEVFGRFNSTGSGAINSSLSASASSASLTNGSATPLYPAAVTQRSGETWFEVGRSKTYTPTADDVGHVLKFECVVVDAETKLPVGPVNTILTSRVIPAPSPIPRRQIRVDGMGHLDVDGRMSTSGTFTVLSYNILSEAYASNDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYDEFFSPELDKHGYYGLYKRKTNEVYSSNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEATIPTTQKKSALNRLVKDNVALIVVLEAKVNNQPFDNPGKRQLLCVANTHVNVPQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVSLGYDQHKRRLDGGTNEPLFTNVTRDFIGTLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNKSRR* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00180 600 SUPERFAMILY DNase I-like 246 594 IPR036691 -
Lapu7g00180 600 FunFam Carbon catabolite repressor protein 4 1 219 598 - -
Lapu7g00180 600 Gene3D Endonuclease/exonuclease/phosphatase 221 599 IPR036691 -
Lapu7g00180 600 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 162 593 - -
Lapu7g00180 600 CDD Deadenylase_CCR4 252 593 - -
Lapu7g00180 600 Pfam Endonuclease/Exonuclease/phosphatase family 253 584 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00180 Lapu-Chr7 1892576 1899941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00180 278 480 EF-hand Containing Proteins AT5G54130 25.234 1.72e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00180 K12603 - gmx:100819402 1130.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00180 7 1892576 1899941 Lapu7g00180 7 1892576 1899941 ECH
Lapu6g00750 6 7870873 7878825 Lapu7g00180 7 1892576 1899941 PCT