Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01710 ATGGTGCAGTGCTTTGATGGATTAAAGCAGTTGTATACTGCTGTGATAAACTTTTGTGATGCTGATTTGTCCCTGCAGCAGCCTAGAGGTTTACAACATCCAGAAGCACTTGCAAGAGAAACAGTGTTTAGTGTAAGTGAGATTGAAGCACTGTATGAACTATTCAAGAAAATCAGCAGTGCAGTAACTGATGATGGACTAATTACTAAGGATGAATTTCAGTTGGCCTTATTCAAGACAACAAAGAAAGAGAGCTTATTTGCGGATAGGGTGTTTGACTTGTTTGACACAAAGCATCATGGGATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCTGTCTTTCATCCCAATGCATCAATTAATGATAAGATTGAGTTTTCATTCCAATTGTATGATCTCAAACAGCAAGGATTTATTCAGAGACAGGAGTTAAAACAAATGGTGGTGGCTACTCTAGCTGAAGCTGGCATGAATCTTGCAGATGACGTGATTGAAAGCATTATTGACAAGACATTTGAGGAAGCTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCTTCCCTTCTTAAAAATATGACTCTTCAGTACCTCAAAGATATTACAACTACATTTCCCAGTTTTGTATTTCACTCACAAGTTGACGATGTTTGA 684 0.383 MVQCFDGLKQLYTAVINFCDADLSLQQPRGLQHPEALARETVFSVSEIEALYELFKKISSAVTDDGLITKDEFQLALFKTTKKESLFADRVFDLFDTKHHGILDFKEFALALSVFHPNASINDKIEFSFQLYDLKQQGFIQRQELKQMVVATLAEAGMNLADDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLQHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDV* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01710 227 ProSiteProfiles EF-hand calcium-binding domain profile. 164 199 IPR002048 GO:0005509
Lapu6g01710 227 SMART efh_1 87 115 IPR002048 GO:0005509
Lapu6g01710 227 SMART efh_1 168 196 IPR002048 GO:0005509
Lapu6g01710 227 SMART efh_1 124 152 IPR002048 GO:0005509
Lapu6g01710 227 PRINTS Recoverin family signature 138 156 - -
Lapu6g01710 227 PRINTS Recoverin family signature 91 112 - -
Lapu6g01710 227 PRINTS Recoverin family signature 184 204 - -
Lapu6g01710 227 Pfam EF-hand domain pair 65 108 IPR002048 GO:0005509
Lapu6g01710 227 PANTHER CALCINEURIN B 26 226 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lapu6g01710 227 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Lapu6g01710 227 Pfam EF hand 169 193 IPR002048 GO:0005509
Lapu6g01710 227 Pfam EF hand 129 149 IPR002048 GO:0005509
Lapu6g01710 227 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Lapu6g01710 227 Gene3D - 33 227 - -
Lapu6g01710 227 FunFam calcineurin B-like protein 3 33 226 - -
Lapu6g01710 227 SUPERFAMILY EF-hand 35 219 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01710 Lapu-Chr6 16959679 16965677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01710 1 226 EF-hand Containing Proteins AT5G55990 82.301 4.91e-132 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01710 K06268 - gmx:100808191 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01710 6 16959679 16965677 Lapu6g01710 6 16959679 16965677 ECH
Lapu3g00050 3 872072 879148 Lapu6g01710 6 16959679 16965677 PCT