Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00050 ATGGTGCAGTGCCTAGACGGATTGAAGCATTTGTGTGCTGCTCTGGTAAATTGTTGTGATGCCGATTCGTCAAAGCAACCTAGAGGTTTAGAAAATCCAGAAGTTCTTGCAAGAGAGACAGTGTTTAGTGTAAGTGAGATTGAAGCGCTGTATGAACTGTTCAAGAAGATCAGCAGTGCAGTGATTGACGATGGTCTGATTAATAAGGAAGAATTTCAGTTAGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCAGATAGGGTGTTTGACTTGTTTGATACAAAGCACAATGGCATTCTTGATTTTGAAGAATTTGCACGGGCTCTCTCTGTCTTTCATCCGAATGCACCAATTGATGATAAGATTGAGTTTTCATTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGGCAAGAGGTAAAACAAATGGTAGTGGCCACTCTAGCTGAATCTGGCATGAATCTTTCAGATGATGTGGTCGAAAGTATTATTGACAAGACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCGGCATCCATCTCTTCTGAAAAATATGACTCTTCAGTATCTCAAAGACATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGATACTTGA 681 0.395 MVQCLDGLKHLCAALVNCCDADSSKQPRGLENPEVLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVVESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00050 226 FunFam calcineurin B-like protein 3 32 225 - -
Lapu3g00050 226 Pfam EF-hand domain pair 64 109 IPR002048 GO:0005509
Lapu3g00050 226 SUPERFAMILY EF-hand 33 218 IPR011992 -
Lapu3g00050 226 ProSiteProfiles EF-hand calcium-binding domain profile. 163 198 IPR002048 GO:0005509
Lapu3g00050 226 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Lapu3g00050 226 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Lapu3g00050 226 PANTHER CALCINEURIN B 17 225 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lapu3g00050 226 Gene3D - 32 226 - -
Lapu3g00050 226 SMART efh_1 123 151 IPR002048 GO:0005509
Lapu3g00050 226 SMART efh_1 86 114 IPR002048 GO:0005509
Lapu3g00050 226 SMART efh_1 167 195 IPR002048 GO:0005509
Lapu3g00050 226 Pfam EF-hand domain pair 122 190 IPR002048 GO:0005509
Lapu3g00050 226 PRINTS Recoverin family signature 90 111 - -
Lapu3g00050 226 PRINTS Recoverin family signature 183 203 - -
Lapu3g00050 226 PRINTS Recoverin family signature 137 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00050 Lapu-Chr3 872072 879148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00050 1 226 EF-hand Containing Proteins AT5G55990 88.496 9.63e-149 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00050 K06268 - gmx:100791045 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00050 3 872072 879148 Lapu6g01710 6 16959679 16965677 PCT