Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01700 ATGGGCCTTGTTGTTTCTGAGGATGCCCTCAACAAACTCCAAGCTCTCATGGATCAAGTTGAGGAGGAGCCACTGCTGAGAACTTTTCAGAATGTTCATCAAGGATGTATCACGGAAACCTTAATTCGATTTCTTAAAGCAAGGGAGTGGAATGTTACCAAGGCACATAAAATGGTAATCGATTGTTTAAATTGGAGAGTGCAAAATGAGATTGACAACATATTATCGAAACCTATAATTCCTACTGATTTTTATCGAGGCATTCGCGATTCACAACTTATAGGTTTGTCAGGGTACTCAAGAGAGGGTCTTCCTGTCTTTGCAATTGGTGTTGGGCTTAGCACATTTGACAAAGCATCTGTCCATTATTATGTGCAGTCTCATATTCAAATTAACGAATATCGTGATCGTGTAATATTGCCTTCTGCATCAAAGAAGCATGGGAAGCCTATCACCACATGTGTAAAAGTTTTGGATATGACTGGTCTGAAGTTGTCAGCCCTGAATCAGATCAAGTTGTTGACAATAATATCATCCATCGATGATCTGAACTACCCTGAGAAAACAAATACTTATTACATTGTAAATGCCCCATACATATTTTCAGCTTGTTGGAAGGTTGTGAAGCCACTTCTACAAGAGAGGACTAGAAGAAAAGTGCAAGTCTTGCCAGGTTGCGGGCGAGATGAACTGTTGAAGATCATGGATTATGCATCGCTGCCACATTTCTGTAGAAGAGAAGGCTCTGGATCATCCAGACATTCAGAGAATGGAAATGGAAATGAAAACTGCTATTCCTTGGATCATCCTTTCCATCAGAAGCTCTACAATCACATAAAGGAGCAATCTAGAATCCATGAAGCTGTTGAACCAGTCAAGCAGGGATCATTCCATGTTGATTTTCCTGAACCTCCTGCTGAGAAAGCTGAGATTGTCAAGACTTTAGAGTCTGAGCTACACAAGTTTAAGATCGGCAATGGGACTTGTGATTGA 993 0.4058 MGLVVSEDALNKLQALMDQVEEEPLLRTFQNVHQGCITETLIRFLKAREWNVTKAHKMVIDCLNWRVQNEIDNILSKPIIPTDFYRGIRDSQLIGLSGYSREGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVILPSASKKHGKPITTCVKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRRKVQVLPGCGRDELLKIMDYASLPHFCRREGSGSSRHSENGNGNENCYSLDHPFHQKLYNHIKEQSRIHEAVEPVKQGSFHVDFPEPPAEKAEIVKTLESELHKFKIGNGTCD* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01700 330 SUPERFAMILY CRAL/TRIO domain 83 247 IPR036865 -
Lapu6g01700 330 SMART CRAL_TRIO_N_2 37 62 IPR011074 -
Lapu6g01700 330 CDD SEC14 85 243 IPR001251 -
Lapu6g01700 330 Coils Coil 3 23 - -
Lapu6g01700 330 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 2 328 - -
Lapu6g01700 330 SMART sec14_4 88 249 IPR001251 -
Lapu6g01700 330 Pfam CRAL/TRIO, N-terminal domain 10 59 IPR011074 -
Lapu6g01700 330 Pfam CRAL/TRIO domain 92 243 IPR001251 -
Lapu6g01700 330 SUPERFAMILY CRAL/TRIO N-terminal domain 7 78 IPR036273 -
Lapu6g01700 330 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 241 IPR001251 -
Lapu6g01700 330 Gene3D - 4 293 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01700 Lapu-Chr6 16866547 16871160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01700 1 327 Acyl Lipid Metabolism Gene Families AT5G47730 73.394 5.11e-179 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01700 K26544 - gmx:100793867 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01700 6 16866547 16871160 Lapu6g01700 6 16866547 16871160 ECH
Lapu3g00057 3 929306 933368 Lapu6g01700 6 16866547 16871160 PCT