Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00057 ATGGGGGTTGCTTCCCAGGATGCCATCAAGCAGTTCCAGGCATTCATTGACCAAGTTGAGGAGCCTTTGCGGAGAACGTTTCAGAATGTTCATCAAGGATATGTCACCGAAACTTTAATGCGGTTTCTAAAAGCAAGGGACTGGGATCCTTCCAAGGCCTGTAAAATGTTGGTTGACTGTTTAAATTGGAGAGTGCAAAATGAGATTGACCATATATTATCTAAACCAATTGTTCCTGCTGATTTATATAGAGCAGTGCGTGATTCACAACTCATAGGATTGTCAGGTTACTCCAAAGAGGGTCTGCCTGTCTTTGCAATCGGTGTTGGGCTTAGCACATTCGACAAAGCATCTGTCCATTATTACGTGCAGTCACACATTCAAATTAATGAATATCGTGACCGTATAATCTTGCCCTCTGCATCAAAGAAGCATAAGCGGACTATTACCACTTGTATAAAGGTTTTAGACATGACCGGTCTGAAGTTATCAGCCCTGAATCAGATTAAGTTGTTAACTATTATATCATCCATTGATGATCTGAATTACCCTGAGAGGACAAATACTTATTACATTGCAAATGCTCCATACATATTTTCAGCTTGTTGGAAGGTTGTGAAGCCACTTTTACAAGAGAGGACAAGAAGAAAAATACAGGTTTTACCCGGTTGTGGTCGAGATGAGCTGTTGAATGTCATGGATTACTCGTCTCTACCACATTTCTGTAAAAGAGAAGGCTCCGGATCATCCAGACATTCAGAAATTGGAAGTGAAAATTGCTATTCCTTGGATCACCCCTTCCATCAAGAGCTCTACAACCACATCAAGCAGCAAGCCAGACTTCGTGAAGCTGTTGAACCCATCAAACACGGCTCGTTTCATGTGGATTTTCCAGAACCTCCAGATGATGAAGTTAAGATTGCCGAGACTATAGAGTCAGAGTTACACAAGTTTGAGAACGGCAATGGTGTCTAA 975 0.4164 MGVASQDAIKQFQAFIDQVEEPLRRTFQNVHQGYVTETLMRFLKARDWDPSKACKMLVDCLNWRVQNEIDHILSKPIVPADLYRAVRDSQLIGLSGYSKEGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRIILPSASKKHKRTITTCIKVLDMTGLKLSALNQIKLLTIISSIDDLNYPERTNTYYIANAPYIFSACWKVVKPLLQERTRRKIQVLPGCGRDELLNVMDYSSLPHFCKREGSGSSRHSEIGSENCYSLDHPFHQELYNHIKQQARLREAVEPIKHGSFHVDFPEPPDDEVKIAETIESELHKFENGNGV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00057 324 Pfam CRAL/TRIO domain 90 241 IPR001251 -
Lapu3g00057 324 CDD SEC14 83 241 IPR001251 -
Lapu3g00057 324 SMART sec14_4 79 247 IPR001251 -
Lapu3g00057 324 SUPERFAMILY CRAL/TRIO domain 81 277 IPR036865 -
Lapu3g00057 324 Gene3D - 3 288 IPR036865 -
Lapu3g00057 324 Pfam CRAL/TRIO, N-terminal domain 24 59 IPR011074 -
Lapu3g00057 324 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 239 IPR001251 -
Lapu3g00057 324 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Lapu3g00057 324 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 323 - -
Lapu3g00057 324 SUPERFAMILY CRAL/TRIO N-terminal domain 13 76 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00057 Lapu-Chr3 929306 933368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00057 1 324 Acyl Lipid Metabolism Gene Families AT5G47730 72.222 6.04e-178 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00057 K26544 - gmx:547507 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00057 3 929306 933368 Lapu6g01700 6 16866547 16871160 PCT