Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01642 ATGAAGACAGGATCGCTTTCCAAAGAGTACCAGGAATGGTTCAATTTGGCTGATTCAGACGGAGATGGACGAATCTCTGGAAACGAGGCAACTAAGTTTTTCGCTCTCTCCAACTTGTCGCGCTCGCAACTCAAACAGCTTTGGACTCTCGCCGATGTCAAACGACAGGGGTTTTTGGGTTTCCCGGAGTTCGTTACTGCGATGCAGTTGGTTTCGTTGGCGCAAGCAGGGCAAGAACTTAACTCTGATATTCTAAAAACTCAAGTTGATAAGGAAAATATTAAACCTCCTATATTGGAAGGACTCGATGCTTTAGTAGCACAAAAGAGTTTAACCATTACTACCCGGCCCGAAGTAAACGGGATTCCTCAGCCTCAAGTGTTTCCATCTAATCGGTGGTTTGGTTCAAAATCTTCAAAGAAATTACCTCTCAATTCAGTTACGTCAATCATTGATGGCTTGAAGAGATTATATATCGAGAGGTTGAAGCCGTTGGAAGTTACTTATCGATATAATGATTTCGTGTCTCCATTGTTGACCAACACTGATTTTGATGCTAAACCCATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAGATGTGATTATCCAGGAGCACATGTTGGACCAGAGCCTACCACGGATAGATTTGTTGTTGTCATGTCTGGACCTGATGAGAGGAGTATTCCTGGAAATACCATCGCTGTTGATGCTGACATGCCTTTCAGCGGCCTGACAACATTTGGAGGTTCATTTTTATCGAAGTTCCAATGTTCTCAAATGCCACATCCTCTGTTGGATGAAATAACACTTGTGGACACTCCTGGTGTCCTATCTGGAGAGAAACAGAGGACTCAACGAAGTTATGATTTCACTGGTGTCGTGTCTTGGTTTGCTGCAAAATCTGATCTCATTCTTCTCCTATTTGATCCTCATAAACTAGACATCAGTGATGAGTTTAAACGCGTAATCACATCTTTACGTGGTAATGATGACAAGATACGGGTGGTTTTGAATAAGGCAGATCAAGTTGATACTCAACAGCTCATGCGAGTTTATGGAGCGTTGATGTGGTCATTGGGGAAAGTTCTAAATACTCCCGAAGTTTCACGTGTATACATTGGGTAG 1155 0.4199 MKTGSLSKEYQEWFNLADSDGDGRISGNEATKFFALSNLSRSQLKQLWTLADVKRQGFLGFPEFVTAMQLVSLAQAGQELNSDILKTQVDKENIKPPILEGLDALVAQKSLTITTRPEVNGIPQPQVFPSNRWFGSKSSKKLPLNSVTSIIDGLKRLYIERLKPLEVTYRYNDFVSPLLTNTDFDAKPMVMLLGQYSTGKTTFIKHLLRCDYPGAHVGPEPTTDRFVVVMSGPDERSIPGNTIAVDADMPFSGLTTFGGSFLSKFQCSQMPHPLLDEITLVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKSDLILLLFDPHKLDISDEFKRVITSLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIG* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01642 384 CDD EH 10 76 IPR000261 GO:0005515
Lapu6g01642 384 ProSiteProfiles EH domain profile. 6 84 IPR000261 GO:0005515
Lapu6g01642 384 Pfam Cytoskeletal-regulatory complex EF hand 8 71 IPR000261 GO:0005515
Lapu6g01642 384 Pfam N-terminal EH-domain containing protein 153 185 IPR031692 -
Lapu6g01642 384 Pfam Dynamin family 190 349 IPR045063 -
Lapu6g01642 384 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Lapu6g01642 384 PANTHER EH DOMAIN 10 381 - -
Lapu6g01642 384 CDD EHD 189 384 - -
Lapu6g01642 384 SMART efh_1 9 37 IPR002048 GO:0005509
Lapu6g01642 384 SMART efh_1 43 71 IPR002048 GO:0005509
Lapu6g01642 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 372 IPR027417 -
Lapu6g01642 384 FunFam EH domain-containing protein 1 190 384 - -
Lapu6g01642 384 Gene3D - 190 384 IPR027417 -
Lapu6g01642 384 Gene3D - 4 99 - -
Lapu6g01642 384 SMART eh_3 1 90 IPR000261 GO:0005515
Lapu6g01642 384 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 184 384 IPR030381 GO:0005525
Lapu6g01642 384 Gene3D - 154 189 - -
Lapu6g01642 384 SUPERFAMILY EF-hand 8 77 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01642 Lapu-Chr6 16288929 16292721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01642 4 384 EF-hand Containing Proteins AT4G05520 74.805 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01642 K12483 - gmx:100809091 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01642 6 16288929 16292721 Lapu6g01642 6 16288929 16292721 ECH
Lapu3g00102 3 1284514 1289329 Lapu6g01642 6 16288929 16292721 PCT