Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00102 ATGAAAACAGTGTCCGATTGGATCGATTCGTGTTCCAGAGAGCAATTGACGACGTATCAAGAATGGTTCAACTCAGCCGATTCAGACAGAGATGGCCGTATCTCTGGAAATGATGCAACCAAGTTCTTTGCTCTCTCCAACTTGTCTCGCTCGCAACTCAAGCAGGTTTGGGCTGTCGCCGATGCTAAAAGGCAAGGATTTCTAGGTTTTCAAGAGTTTGTTATCGCAATGCAGCTCGTTGCGCTGGCACAAGCAGGATACGACATCAACTCGGATATCCTTAAATCGGAAATTGACAAGGAAAATATTAAATTTCCAGTAATGGAAGGGCTTGATGCTTTAATAGCAAAAACAAAGAGTTTGACAATACATTCCCAATCTGATGTATTTGGGACTGCTCAACCTCAGCCCTCATCACTCAATTCATGGGCTGCTCCAAAATCTGTGAAGAAATTACCTCTCAATGCAGTTACATCAATAATTGATGGCCTGAAGAAATTGTATGTGGAAAAGTTAAAGCCTTTGGAGGTCACTTATCAATTCAATGATTTTGTATCTCCATTATTGACCAACAGTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCCACAGGGAAAACAACCTTCATAAAACATCTGCTAAGATGCAATTATCCAGGTGCACACATTGGACCAGAGCCTACAACTGACAGATTTGTTGTTGTCATGTCTGGTCCTGATGAAAGGAGTATTCCTGGAAATACAATAGCTGTTGATGCTGATATGCCTTTTAGTGGCCTGACAACTTTTGGTGGTTCATTTTTGTCAAAGTTCCAATGTTCTCAACTGCCACATCCACTGCTAGATGAAATAACATTTGTGGACACTCCTGGTGTCCTCTCTGGAGAAAAACAAAGGACTCAACGAAGTTATGACTTCACTGGTGTTATATCTTGGTTTGCCGCAAAATGTGATCTGATACTTCTCCTATTTGATCCTCACAAACTTGACATTAGTGATGAATTTAAACGTGTAATTGGGTCGCTACATGGTCATGATGACAAGATACGTGTGGTTTTGAATAAAGCAGACCAAATTGATACTCAACAACTCATGAGAGTTTATGGAGCATTGATGTGGTCTCTGGGGAAAGTTCTGAATACTCCAGAAGTTATGCGTGTATATATTGGCTCATTTAATGATAAGCCTATAAACGAAGGCTTTGTTGGCCCATTAGGACAGGAGCTCTTTGAAAAGGAACAGAATGATCTCCTTGCAGACTTGGTAGATATTCCAAGAAAATCATGCGACAGTCGGATCAATGAATTTGTGAAACGTGCTAGATCTGCTAAAATTCATGCGTATATAATTAGTCATCTTAGGAATGAGATGCCTGCAATGATTGGCAAAGCTAAGGCTCAACAAAGGCTTATAGAGAATCTTGAAGACGAATTTAGAAAGGTTCAAAGGGAATTTCATCTGCCAGCTGGTGATTTTCCCAACGTAGAACACTTCAGAGAGGTTTTGAGTGGCTATAGCATTGACAAATTCGAGAAACTAAAGCCCAAAATGATTCAAGCCGTTGATGACATGCTTGGATACGAAATACCGGAGTTATTAAAAAAATTCAGAAATCCTTATGATTGA 1638 0.3999 MKTVSDWIDSCSREQLTTYQEWFNSADSDRDGRISGNDATKFFALSNLSRSQLKQVWAVADAKRQGFLGFQEFVIAMQLVALAQAGYDINSDILKSEIDKENIKFPVMEGLDALIAKTKSLTIHSQSDVFGTAQPQPSSLNSWAAPKSVKKLPLNAVTSIIDGLKKLYVEKLKPLEVTYQFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTIAVDADMPFSGLTTFGGSFLSKFQCSQLPHPLLDEITFVDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIGSLHGHDDKIRVVLNKADQIDTQQLMRVYGALMWSLGKVLNTPEVMRVYIGSFNDKPINEGFVGPLGQELFEKEQNDLLADLVDIPRKSCDSRINEFVKRARSAKIHAYIISHLRNEMPAMIGKAKAQQRLIENLEDEFRKVQREFHLPAGDFPNVEHFREVLSGYSIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00102 545 Pfam N-terminal EH-domain containing protein 163 195 IPR031692 -
Lapu3g00102 545 Pfam Dynamin family 200 359 IPR045063 -
Lapu3g00102 545 Pfam Domain of unknown function (DUF5600) 436 536 IPR040990 -
Lapu3g00102 545 SUPERFAMILY EF-hand 6 89 IPR011992 -
Lapu3g00102 545 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 194 434 IPR030381 GO:0005525
Lapu3g00102 545 ProSiteProfiles EH domain profile. 15 86 IPR000261 GO:0005515
Lapu3g00102 545 Pfam Cytoskeletal-regulatory complex EF hand 16 80 IPR000261 GO:0005515
Lapu3g00102 545 Gene3D - 10 105 - -
Lapu3g00102 545 CDD EH 19 85 IPR000261 GO:0005515
Lapu3g00102 545 FunFam EH domain-containing protein 1 200 428 - -
Lapu3g00102 545 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Lapu3g00102 545 SMART efh_1 18 46 IPR002048 GO:0005509
Lapu3g00102 545 SMART efh_1 52 80 IPR002048 GO:0005509
Lapu3g00102 545 Gene3D - 164 536 - -
Lapu3g00102 545 Coils Coil 468 488 - -
Lapu3g00102 545 CDD EHD 199 443 - -
Lapu3g00102 545 Gene3D - 200 428 IPR027417 -
Lapu3g00102 545 PANTHER EH DOMAIN 17 542 - -
Lapu3g00102 545 SMART eh_3 8 103 IPR000261 GO:0005515
Lapu3g00102 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 467 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00102 Lapu-Chr3 1284514 1289329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00102 8 545 EF-hand Containing Proteins AT4G05520 76.111 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00102 K12483 - gmx:100803757 1041.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00102 3 1284514 1289329 Lapu6g01642 6 16288929 16292721 PCT