Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01224 ATGCAGCGTTTTCCCACCAAGTTGATCGCCAAAATCGCTCGTCCAGCATGCGACGTGTTCATCAACCACCGTGGGATAGACACGAAGAGGAACGTTGCGGGGTTGTTGTACGATAATCTTACGAGGATGGGAGTGAGGTCGTTCTTGGACAGCATGAACATGAAACCCGGGGACAGGCTCTTCGACCACATTGATAGAGGCATTCTGGGTTGCAAGGTTGGTGTTGCAGTCTTCTCTCCTCGCTACTGTGACTCCTATTTCTGCCTCCACGAGCTCGCTCTTCTCATGGAGTCCAACAAAAGGGTCGTTCCCGTTTTCTACGACGTGAAACCCTCGCAACTAATGGTCAAGGACAACGGAACCTGCCCTCCTAAGGAGCTTCAGAGGTTCGCCTTAGCACTTGAAGAAGCAAAGAACACCGTGGGATTGACGTTTGATTCTTTGAACGGGGATTGGTCGGAATTGCTAAAGAATGCTTCCGAAGCGGTGATCATGAACTTGTTGGAGGTAGAGGAAGAAAGGAAATACCGCAGGAAGCACCGTTGA 546 0.5055 MQRFPTKLIAKIARPACDVFINHRGIDTKRNVAGLLYDNLTRMGVRSFLDSMNMKPGDRLFDHIDRGILGCKVGVAVFSPRYCDSYFCLHELALLMESNKRVVPVFYDVKPSQLMVKDNGTCPPKELQRFALALEEAKNTVGLTFDSLNGDWSELLKNASEAVIMNLLEVEEERKYRRKHR* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01224 181 SMART till_3 16 162 IPR000157 GO:0007165
Lapu6g01224 181 Gene3D - 12 170 IPR035897 -
Lapu6g01224 181 Pfam TIR domain 19 112 IPR000157 GO:0007165
Lapu6g01224 181 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 142 IPR035897 -
Lapu6g01224 181 PANTHER COP1-INTERACTING PROTEIN-RELATED 14 175 - -
Lapu6g01224 181 ProSiteProfiles TIR domain profile. 15 160 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01224 Lapu-Chr6 12092198 12092891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01224 9 146 Miscellaneous Gene Families AT1G57670 30.065 5.57e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01224 - - gmx:100806903 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01224 6 12092198 12092891 Lapu6g01224 6 12092198 12092891 ECH
Lapu3g02996 3 53151780 53152592 Lapu6g01224 6 12092198 12092891 PCT