Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02996 ATGCAACGTTTGCCAGCCACTTTGTGCCGCAAACTGGCTCGTCCAGCATGCGATGTGTTCATAAACCACCGTGGCATCGACACGAAGAGGAACATCGCGGGGTTGCTCTACGACAGTTTGACTAGGATCAAAGTGCGGTCGTTTTTGGACAGCATGAACATGAAACCTGGGGACAGGTTGTTCGATCACATCGACAGGGCCATTCTCGGGTGCAAAGTGGGTGTTGCAGTGTTTTCGCCACGTTACTGTGATTCTTATTTTTGTCTCCATGAACTCGCTCTTCTCATGGAGTCAAAGAAAAGGGTCGTCCCCATCTTCTACGACGTGAAACCTTCGCAGCTTGTGGTCAAGGACAACGGGACTTGCCCCGCTGAAGAGCTTCAGAGATTCTCTTTAGCACTTGAGGAAGCTAAATACACTGTTGGATTGACCTTTGATTCTTTGAAAGGGGACTGGTCGGAGATACTGAGAGATGCTTCAGATGCAGTGATCATGAACTTGCTGGAGGTAGAGGAAGAGCGTAAAAACATGAAGAGGAAACTGTGA 546 0.4872 MQRLPATLCRKLARPACDVFINHRGIDTKRNIAGLLYDSLTRIKVRSFLDSMNMKPGDRLFDHIDRAILGCKVGVAVFSPRYCDSYFCLHELALLMESKKRVVPIFYDVKPSQLVVKDNGTCPAEELQRFSLALEEAKYTVGLTFDSLKGDWSEILRDASDAVIMNLLEVEEERKNMKRKL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02996 181 PANTHER COP1-INTERACTING PROTEIN-RELATED 14 178 - -
Lapu3g02996 181 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 139 IPR035897 -
Lapu3g02996 181 ProSiteProfiles TIR domain profile. 15 138 IPR000157 GO:0007165
Lapu3g02996 181 Pfam TIR domain 18 114 IPR000157 GO:0007165
Lapu3g02996 181 Gene3D - 13 173 IPR035897 -
Lapu3g02996 181 SMART till_3 16 149 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02996 Lapu-Chr3 53151780 53152592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02996 12 146 Miscellaneous Gene Families AT1G57670 32.000 8.14e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02996 - - gmx:100798207 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02996 3 53151780 53152592 Lapu6g01224 6 12092198 12092891 PCT