Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01209 ATGTCTTCATATTTTTCAAGCTTTGGTACAAAAATCCCGTGTCTTGGGAAGGGTTACGATGATGTCTTCACAGTGACCAAGACCAACCATGCAGTGAAACAGCCAGGTTCATGCTCCAACTATAAAGTGCCCCGCAACCTCTCAAAGCAGCACATTGGTTTTGTGTCAAAATTCGACCAAATTTGTTCTTCTCCTGTGATGGAGGAGGAGGGGCAGAAAAGGATGGCTGTTTTGCCTGAATTATCAGAGGAATATTCCAAGGAATTGCAGGTGGCTGTTAGAGCAGTGCAGATGGCGTGTTCCCTCTGCCAGAGAGTGCAGGAAACTATAATTTCCAACACTGGGTCTGGGACCAATCATCCTCAGGTGCAGTCCAAGGATGATAATTCTCCGGTCACAGTAGCAGATTGGAGTGTTCAAGCAATTGTCAGCTGGATGCTGTCAGAATGTTTAGGGAGTCAAAATGTCTCAATTGTTGCAGAAGAAGATGTTCAAAGTCTCTCCAAGGCTAATGCATCTGAACTGTTAGAAGCTGTGGTTGAAACTGTGAATCAATGTCTAGCTGAAGCACCTCGATTTGGAGTTCAGGAACCAAAATGTGCTCTTTCAACTTCAGATGTTCTTGAAATCATTGGTCGCTGTAATTCAACTGGGGGTCCCACTGGAAGATTTTGGGTACTGGATCCAGTTGATGGCACATTAGGGTTTGTACGTGGAGATCAATATGCTGTAGCTCTAGCACTCATAGAGGATGGAGAAGTGAAGCTTGGTGTTCTTGGATGTCCTAACTACCCAATGAGGAAGGAATGGTTAAGTTATCATCACCGCTATCATAGGATTATATCCAAGTTGACTCCTCCAACTGCTGAAACTTGGAACAAAGGTTGTGTGCTGTATGCTAAAAGGGGTAGTGGGAAGGCTTGGATGCAACCGCTGCTCCATGTCAATAAGATGTTTTTGTGGCCAAACCATGCAAAACAAGTTTCTGTTTCTCCCATTGACAATCCTGCACTTGCCACCTTTTGTGAACCAGTTGAAAAGGCCAATTCAAGCCATTCTTTCACTGCAGGATTGGCTCACACTATTGGTCTCAGGAAACAACCGTTGAGGGTATACAGCATGGTGAAGTATGCAACAATAGCTCGTGGGGATGCTGAGGTTTTCATGAAGTTTGCAAGGGCCGGTTACAAGGAGAAAATATGGGATCATGCTGCAGGTGTTATCATCATACAGGAAGCTGGTGGCATGGTAACAGATGCTGGAGGACTTCCCCTAGACTTCTCAAAAGGCTTATATTTAGAAGACCTTGATCGTGGCATAGTTGCTTGTTCTGGAGCCACACTACACGCAAAGATCATTGATGCAGTTGATGCTAGCTGGGGCTCTTCTAGCCTTTGA 1398 0.4499 MSSYFSSFGTKIPCLGKGYDDVFTVTKTNHAVKQPGSCSNYKVPRNLSKQHIGFVSKFDQICSSPVMEEEGQKRMAVLPELSEEYSKELQVAVRAVQMACSLCQRVQETIISNTGSGTNHPQVQSKDDNSPVTVADWSVQAIVSWMLSECLGSQNVSIVAEEDVQSLSKANASELLEAVVETVNQCLAEAPRFGVQEPKCALSTSDVLEIIGRCNSTGGPTGRFWVLDPVDGTLGFVRGDQYAVALALIEDGEVKLGVLGCPNYPMRKEWLSYHHRYHRIISKLTPPTAETWNKGCVLYAKRGSGKAWMQPLLHVNKMFLWPNHAKQVSVSPIDNPALATFCEPVEKANSSHSFTAGLAHTIGLRKQPLRVYSMVKYATIARGDAEVFMKFARAGYKEKIWDHAAGVIIIQEAGGMVTDAGGLPLDFSKGLYLEDLDRGIVACSGATLHAKIIDAVDASWGSSSL* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01209 465 Gene3D - 329 459 - -
Lapu6g01209 465 PANTHER PHOSPHATASE 75 463 - -
Lapu6g01209 465 ProSitePatterns Inositol monophosphatase family signature 2. 401 415 IPR020550 GO:0046854
Lapu6g01209 465 ProSitePatterns Inositol monophosphatase family signature 1. 225 238 IPR020583 -
Lapu6g01209 465 FunFam PAP-specific phosphatase HAL2-like 83 318 - -
Lapu6g01209 465 Pfam Inositol monophosphatase family 128 459 IPR000760 -
Lapu6g01209 465 CDD PAP_phosphatase 88 456 - -
Lapu6g01209 465 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 85 464 IPR006239 GO:0006790|GO:0008441
Lapu6g01209 465 Gene3D - 83 318 - -
Lapu6g01209 465 SUPERFAMILY Carbohydrate phosphatase 85 458 - -
Lapu6g01209 465 PRINTS Inositol monophosphatase superfamily signature 398 422 IPR000760 -
Lapu6g01209 465 PRINTS Inositol monophosphatase superfamily signature 225 241 IPR000760 -
Lapu6g01209 465 FunFam PAP-specific phosphatase HAL2-like 329 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01209 Lapu-Chr6 11924090 11928008 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01209 K01082 - gmx:100776247 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01209 6 11924090 11928008 Lapu6g01209 6 11924090 11928008 ECH
Lapu3g02982 3 52954749 52958687 Lapu6g01209 6 11924090 11928008 PCT